Gene: ATR_00033G00970 (Amborella trichopoda)

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Gene Identifier
ATR_00033G00970
Transcript Identifier
ATR_00033G00970.1
Gene Type
Coding gene
Location
scaffold00033 : 2298262-2311308 : negative

Family

Gene family
HOM03D001254
(123 genes in 31 species)
specific family
Subfamily
ORTHO03D002288
(42 genes in 28 species)
specific family
Duplication type
Tandem duplicate

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Descriptions

Description (AnnoMine)
Uncharacterized RING finger protein EEED8.16
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameevm_27.TU.AmTr_v1.0_scaffold00033.98
idevm_27.model.AmTr_v1.0_scaffold00033.98

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010029ISOPLAZA Integrative Orthologyregulation of seed germinationAT2G26000 AT2G42160

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding
GO:0008270IEAInterProzinc ion binding
GO:0046982ISOPLAZA Integrative Orthologyprotein heterodimerization activityAT2G26000 AT2G42160
GO:0043130ISOPLAZA Integrative Orthologyubiquitin bindingAT2G26000
GO:0004842ISOPLAZA Integrative Orthologyubiquitin-protein ligase activityAT2G26000 AT2G42160

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0000151ISOPLAZA Integrative Orthologyubiquitin ligase complexAT2G26000 AT2G42160

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001841Zinc finger, RING-type
IPR001607Zinc finger, UBP-type
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR011422BRCA1-associated 2

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.