Gene: ATR_00030G00970 (Amborella trichopoda)

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Gene Identifier
ATR_00030G00970
Transcript Identifier
ATR_00030G00970.1
Gene Type
Coding gene
Location
scaffold00030 : 2403089-2406972 : positive

Family

Gene family
HOM03D001361
(115 genes in 31 species)
specific family
Subfamily
ORTHO03D000703
(70 genes in 30 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description (AnnoMine)
40S ribosomal protein S3
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameevm_27.TU.AmTr_v1.0_scaffold00030.98
idevm_27.model.AmTr_v1.0_scaffold00030.98

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006412IEAInterProtranslation
GO:0009651ISOPLAZA Integrative Orthologyresponse to salt stressAT5G35530 AT3G53870 AT2G31610

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003735IEAInterProstructural constituent of ribosome
GO:0003723IEAInterProRNA binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005622IEAInterProintracellular
GO:0015935IEAInterProsmall ribosomal subunit
GO:0005840IEAInterProribosome
GO:0009506ISOPLAZA Integrative OrthologyplasmodesmaAT5G35530 AT3G53870 AT2G31610
GO:0005829ISOPLAZA Integrative OrthologycytosolAT5G35530 AT2G31610
GO:0022627ISOPLAZA Integrative Orthologycytosolic small ribosomal subunitAT5G35530 AT3G53870 AT2G31610
GO:0016020ISOPLAZA Integrative OrthologymembraneAT5G35530 AT3G53870 AT2G31610
GO:0022626ISOPLAZA Integrative Orthologycytosolic ribosomeAT5G35530 AT3G53870 AT2G31610
GO:0005730ISOPLAZA Integrative OrthologynucleolusAT5G35530
GO:0005774ISOPLAZA Integrative Orthologyvacuolar membraneAT2G31610
GO:0005773ISOPLAZA Integrative OrthologyvacuoleAT2G31610
GO:0009507ISOPLAZA Integrative OrthologychloroplastAT2G31610

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR018280Ribosomal protein S3, conserved site
IPR001351Ribosomal protein S3, C-terminal
IPR015946K homology domain-like, alpha/beta
IPR004044K Homology domain, type 2
IPR005703Ribosomal protein S3, eukaryotic/archaeal
IPR009019K homology domain, prokaryotic type

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.