Gene: ATR_00029G04380 (Amborella trichopoda)

Overview top

Gene Identifier
ATR_00029G04380
Transcript Identifier
ATR_00029G04380.1
Gene Type
Coding gene
Location
scaffold00029 : 5972142-6005317 : negative

Family

Gene family
HOM03D004167
(46 genes in 31 species)
specific family
Subfamily
ORTHO03D004335
(36 genes in 30 species)
specific family

Loading...please wait

Descriptions

Description (AnnoMine)
cap-binding protein subunit 1
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameevm_27.TU.AmTr_v1.0_scaffold00029.439
idevm_27.model.AmTr_v1.0_scaffold00029.439

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0016070IEAInterProRNA metabolic process
GO:0045292IEAInterPromRNA cis splicing, via spliceosome
GO:0051028IEAInterPromRNA transport
GO:0009737ISOPLAZA Integrative Orthologyresponse to abscisic acidAT2G13540
GO:0048574ISOPLAZA Integrative Orthologylong-day photoperiodism, floweringAT2G13540
GO:0000394ISOPLAZA Integrative OrthologyRNA splicing, via endonucleolytic cleavage and ligationAT2G13540
GO:0031053ISOPLAZA Integrative Orthologyprimary miRNA processingAT2G13540

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000339IEAInterProRNA cap binding
GO:0005515IEAInterProprotein binding
GO:0005488IEAInterProbinding
GO:0003723IEAInterProRNA binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005846IEAInterPronuclear cap binding complex
GO:0005634ISOPLAZA Integrative OrthologynucleusAT2G13540

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR016024Armadillo-type fold
IPR016021MIF4-like, type 1/2/3
IPR003890MIF4G-like, type 3
IPR015174MIF4G-like, type 2
IPR015172MIF4G-like, type 1
IPR027159Nuclear cap-binding protein subunit 1

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.