Gene: ATR_00025G01690 (Amborella trichopoda)

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Gene Identifier
ATR_00025G01690
Transcript Identifier
ATR_00025G01690.1
Gene Type
Coding gene
Location
scaffold00025 : 2222704-2251276 : negative

Family

Gene family
HOM03D004481
(44 genes in 30 species)
specific family
Subfamily
ORTHO03D004280
(36 genes in 30 species)
specific family

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Descriptions

Description (AnnoMine)
DNA ligase 4
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameevm_27.TU.AmTr_v1.0_scaffold00025.169
idevm_27.model.AmTr_v1.0_scaffold00025.169

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006260IEAInterProDNA replication
GO:0006281IEAInterProDNA repair
GO:0051103IEAInterProDNA ligation involved in DNA repair
GO:0006310IEAInterProDNA recombination
GO:0006302ISOPLAZA Integrative Orthologydouble-strand break repairAT5G57160
GO:0015074ISOPLAZA Integrative OrthologyDNA integrationAT5G57160
GO:0000723ISOPLAZA Integrative Orthologytelomere maintenanceAT5G57160
GO:0010165ISOPLAZA Integrative Orthologyresponse to X-rayAT5G57160
GO:0006974ISOPLAZA Integrative Orthologycellular response to DNA damage stimulusAT5G57160

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003909IEAInterProDNA ligase activity
GO:0003910IEAInterProDNA ligase (ATP) activity
GO:0005524IEAInterProATP binding
GO:0003677IEAInterProDNA binding
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT5G57160

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0048046ISOPLAZA Integrative OrthologyapoplastAT5G57160
GO:0009506ISOPLAZA Integrative OrthologyplasmodesmaAT5G57160

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR012340Nucleic acid-binding, OB-fold
IPR001357BRCT domain
IPR000977DNA ligase, ATP-dependent
IPR012308DNA ligase, ATP-dependent, N-terminal
IPR016059DNA ligase, ATP-dependent, conserved site
IPR012309DNA ligase, ATP-dependent, C-terminal
IPR012310DNA ligase, ATP-dependent, central

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.