Gene: ATR_00024G01600 (Amborella trichopoda)

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Gene Identifier
ATR_00024G01600
Transcript Identifier
ATR_00024G01600.1
Gene Type
Coding gene
Location
scaffold00024 : 3440714-3461116 : negative

Family

Gene family
HOM03D000685
(203 genes in 30 species)
specific family
Subfamily
ORTHO03D016558
(10 genes in 8 species)
specific family

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Descriptions

Description (AnnoMine)
Putative DNA (cytosine-5)-methyltransferase CMT1
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameevm_27.TU.AmTr_v1.0_scaffold00024.163
idevm_27.model.AmTr_v1.0_scaffold00024.163

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006306IEAInterProDNA methylation
GO:0010069ISOPLAZA Integrative Orthologyzygote asymmetric cytokinesis in embryo sacAT1G69770
GO:0051567ISOPLAZA Integrative Orthologyhistone H3-K9 methylationAT1G69770
GO:0045814ISOPLAZA Integrative Orthologynegative regulation of gene expression, epigeneticAT1G69770
GO:0010425ISOPLAZA Integrative OrthologyDNA methylation on cytosine within a CNG sequenceAT1G69770
GO:0006342ISOPLAZA Integrative Orthologychromatin silencingAT1G69770
GO:0006304IEAPLAZA HomologyDNA modificationHOM03D000685
GO:0032259IEAPLAZA HomologymethylationHOM03D000685
GO:0006305IEAPLAZA HomologyDNA alkylationHOM03D000685
GO:0043414IEAPLAZA Homologymacromolecule methylationHOM03D000685
GO:0044728IEAPLAZA HomologyDNA methylation or demethylationHOM03D000685
GO:0040029IEAPLAZA Homologyregulation of gene expression, epigeneticHOM03D000685

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008168IEAInterPromethyltransferase activity
GO:0003677IEAInterProDNA binding
GO:0003886ISOPLAZA Integrative OrthologyDNA (cytosine-5-)-methyltransferase activityAT1G69770

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001525C-5 cytosine methyltransferase
IPR001025Bromo adjacent homology (BAH) domain
IPR016197Chromo domain-like
IPR023780Chromo domain
IPR000953Chromo domain/shadow
IPR018117DNA methylase, C-5 cytosine-specific, active site
IPR025821DNA (cytosine-5-)-methyltransferase, plant
IPR023779Chromo domain, conserved site

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.