Gene: ATR_00016G03530 (Amborella trichopoda)

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Gene Identifier
ATR_00016G03530
Transcript Identifier
ATR_00016G03530.1
Gene Type
Coding gene
Location
scaffold00016 : 7309507-7345287 : positive

Family

Gene family
HOM03D000293
(389 genes in 30 species)
specific family
Subfamily
ORTHO03D003610
(37 genes in 18 species)
specific family

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Descriptions

Description (AnnoMine)
Endoribonuclease Dicer homolog
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameevm_27.TU.AmTr_v1.0_scaffold00016.358
idevm_27.model.AmTr_v1.0_scaffold00016.358

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006396IEAInterProRNA processing
GO:0006353ISOPLAZA Tree-based OrthologyDNA-dependent transcription, terminationAT5G20320
GO:0010599ISOPLAZA Tree-based Orthologyproduction of lsiRNA involved in RNA interferenceAT5G20320
GO:0009616ISOPLAZA Tree-based Orthologyvirus induced gene silencingAT5G20320
GO:0010050ISOPLAZA Tree-based Orthologyvegetative phase changeAT5G20320
GO:0035196ISOPLAZA Integrative Orthologyproduction of miRNAs involved in gene silencing by miRNAAT3G03300 AT5G20320
GO:0010267ISOPLAZA Integrative Orthologyproduction of ta-siRNAs involved in RNA interferenceAT3G03300 AT5G20320
GO:0010216ISOPLAZA Integrative Orthologymaintenance of DNA methylationAT3G03300 AT5G20320
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03D000293
GO:0051607ISOPLAZA Integrative Orthologydefense response to virusAT3G03300

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008026IEAInterProATP-dependent helicase activity
GO:0005515IEAInterProprotein binding
GO:0004525IEAInterProribonuclease III activity
GO:0016891IEAInterProendoribonuclease activity, producing 5'-phosphomonoesters
GO:0003723IEAInterProRNA binding
GO:0004386IEAInterProhelicase activity
GO:0003676IEAInterPronucleic acid binding
GO:0005524IEAInterProATP binding
GO:0016893IEAPLAZA Homologyendonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoestersHOM03D000293
GO:0016788IEAPLAZA Homologyhydrolase activity, acting on ester bondsHOM03D000293
GO:0004540IEAPLAZA Homologyribonuclease activityHOM03D000293
GO:0004521IEAPLAZA Homologyendoribonuclease activityHOM03D000293
GO:0004518IEAPLAZA Homologynuclease activityHOM03D000293
GO:0004519IEAPLAZA Homologyendonuclease activityHOM03D000293

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISOPLAZA Tree-based OrthologynucleusAT5G20320

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000999Ribonuclease III domain
IPR003100Argonaute/Dicer protein, PAZ domain
IPR014001Helicase, superfamily 1/2, ATP-binding domain
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR014720Double-stranded RNA-binding domain
IPR001650Helicase, C-terminal
IPR005034Dicer dimerisation domain
IPR011545DNA/RNA helicase, DEAD/DEAH box type, N-terminal

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.