Gene: ATR_00013G02770 (Amborella trichopoda)

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Gene Identifier
ATR_00013G02770
Transcript Identifier
ATR_00013G02770.1
Gene Type
Coding gene
Location
scaffold00013 : 7933354-7938262 : positive

Family

Gene family
HOM03D000445
(283 genes in 31 species)
specific family
Subfamily
ORTHO03D000588
(76 genes in 29 species)
specific family

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Descriptions

Description (AnnoMine)
Serine hydroxymethyltransferase
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameevm_27.TU.AmTr_v1.0_scaffold00013.279
idevm_27.model.AmTr_v1.0_scaffold00013.279

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006544IEAInterProglycine metabolic process
GO:0006563IEAInterProL-serine metabolic process
GO:0046686ISOPLAZA Integrative Orthologyresponse to cadmium ionAT4G13930
GO:0007623ISOPLAZA Integrative Orthologycircadian rhythmAT4G13930
GO:0009555ISOPLAZA Integrative Orthologypollen developmentAT4G13890
GO:0010197ISOPLAZA Integrative Orthologypolar nucleus fusionAT4G13890
GO:0009069IEAPLAZA Homologyserine family amino acid metabolic processHOM03D000445
GO:0044281IEAPLAZA Homologysmall molecule metabolic processHOM03D000445
GO:0043436IEAPLAZA Homologyoxoacid metabolic processHOM03D000445
GO:0006520IEAPLAZA Homologycellular amino acid metabolic processHOM03D000445
GO:1901564IEAPLAZA Homologyorganonitrogen compound metabolic processHOM03D000445
GO:1901605IEAPLAZA Homologyalpha-amino acid metabolic processHOM03D000445
GO:0006082IEAPLAZA Homologyorganic acid metabolic processHOM03D000445
GO:0019752IEAPLAZA Homologycarboxylic acid metabolic processHOM03D000445

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0030170IEAInterPropyridoxal phosphate binding
GO:0003824IEAInterProcatalytic activity
GO:0004372IEAInterProglycine hydroxymethyltransferase activity
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT4G13930
GO:0048037IEAPLAZA Homologycofactor bindingHOM03D000445
GO:0016742IEAPLAZA Homologyhydroxymethyl-, formyl- and related transferase activityHOM03D000445
GO:0016741IEAPLAZA Homologytransferase activity, transferring one-carbon groupsHOM03D000445

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009506ISOPLAZA Integrative OrthologyplasmodesmaAT4G13930
GO:0005829ISOPLAZA Integrative OrthologycytosolAT4G13930
GO:0005886ISOPLAZA Integrative Orthologyplasma membraneAT4G13930
GO:0016020ISOPLAZA Integrative OrthologymembraneAT4G13930

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR015424Pyridoxal phosphate-dependent transferase
IPR001085Serine hydroxymethyltransferase
IPR015422Pyridoxal phosphate-dependent transferase, major region, subdomain 2
IPR019798Serine hydroxymethyltransferase, pyridoxal phosphate binding site
IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.