Gene: ATR_00008G01210 (Amborella trichopoda)

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Gene Identifier
ATR_00008G01210
Transcript Identifier
ATR_00008G01210.1
Gene Type
Coding gene
Location
scaffold00008 : 3790191-3897855 : positive

Family

Gene family
HOM03D000215
(477 genes in 30 species)
specific family
Subfamily
ORTHO03D000293
(107 genes in 29 species)
specific family
Duplication type
Tandem duplicate   and   Block duplicate

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Descriptions

Description (AnnoMine)
Protein argonaute
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameevm_27.TU.AmTr_v1.0_scaffold00008.121
idevm_27.model.AmTr_v1.0_scaffold00008.121

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0048481ISOPLAZA Integrative Orthologyovule developmentAT5G21150
GO:0010529ISOPLAZA Integrative Orthologynegative regulation of transpositionAT5G21150
GO:0006342ISOPLAZA Integrative Orthologychromatin silencingAT2G32940 AT2G27040
GO:0030422ISOPLAZA Integrative Orthologyproduction of siRNA involved in RNA interferenceAT2G32940 AT2G27040
GO:0006306ISOPLAZA Integrative OrthologyDNA methylationAT2G32940 AT2G27040
GO:0031048ISOPLAZA Integrative Orthologychromatin silencing by small RNAAT2G27040
GO:0009816ISOPLAZA Integrative Orthologydefense response to bacterium, incompatible interactionAT2G27040
GO:0010495ISOPLAZA Integrative Orthologylong-distance posttranscriptional gene silencingAT2G27040
GO:0051567ISOPLAZA Integrative Orthologyhistone H3-K9 methylationAT2G27040

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding
GO:0003676IEAInterPronucleic acid binding
GO:0035197ISOPLAZA Integrative OrthologysiRNA bindingAT5G21150 AT2G32940 AT2G27040

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737ISOPLAZA Integrative OrthologycytoplasmAT5G21150
GO:0005634ISOPLAZA Integrative OrthologynucleusAT2G32940
GO:0015030ISOPLAZA Integrative OrthologyCajal bodyAT2G27040
GO:0005719ISOPLAZA Integrative Orthologynuclear euchromatinAT2G27040
GO:0005730ISOPLAZA Integrative OrthologynucleolusAT2G27040

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR003100Argonaute/Dicer protein, PAZ domain
IPR003165Stem cell self-renewal protein Piwi
IPR014811Domain of unknown function DUF1785
IPR012337Ribonuclease H-like domain

No MapMan annotations defined for this gene.
SignalP Description
SignalP-TMSignal Peptide detected using TM network