Gene: ATR_00006G02990 (Amborella trichopoda)

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Gene Identifier
ATR_00006G02990
Transcript Identifier
ATR_00006G02990.1
Gene Type
Coding gene
Location
scaffold00006 : 8953050-8983229 : negative

Family

Gene family
HOM03D003800
(49 genes in 30 species)
specific family
Subfamily
ORTHO03D030806
(4 genes in 4 species)
specific family

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Descriptions

Description (AnnoMine)
CpG-binding domain-containing protein 9
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameevm_27.TU.AmTr_v1.0_scaffold00006.303
idevm_27.model.AmTr_v1.0_scaffold00006.303

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0016573ISOPLAZA Integrative Orthologyhistone acetylationAT3G01460
GO:0048573ISOPLAZA Integrative Orthologyphotoperiodism, floweringAT3G01460
GO:0043967ISOPLAZA Integrative Orthologyhistone H4 acetylationAT3G01460
GO:0010223ISOPLAZA Integrative Orthologysecondary shoot formationAT3G01460
GO:0043966ISOPLAZA Integrative Orthologyhistone H3 acetylationAT3G01460
GO:0006355ISOPLAZA Integrative Orthologyregulation of transcription, DNA-dependentAT3G01460

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding
GO:0008270IEAInterProzinc ion binding
GO:0042393ISOPLAZA Integrative Orthologyhistone bindingAT3G01460
GO:0004402ISOPLAZA Integrative Orthologyhistone acetyltransferase activityAT3G01460
GO:0003677IEAPLAZA HomologyDNA bindingHOM03D003800

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEAInterPronucleus
GO:0009506ISOPLAZA Integrative OrthologyplasmodesmaAT3G01460

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR019787Zinc finger, PHD-finger
IPR001487Bromodomain
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR001841Zinc finger, RING-type
IPR003888FY-rich, N-terminal
IPR001965Zinc finger, PHD-type
IPR019786Zinc finger, PHD-type, conserved site
IPR018501DDT domain superfamily
IPR003889FY-rich, C-terminal
IPR011011Zinc finger, FYVE/PHD-type

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.