Gene: ATR_00006G00280 (Amborella trichopoda)

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Gene Identifier
ATR_00006G00280
Transcript Identifier
ATR_00006G00280.1
Gene Type
Coding gene
Location
scaffold00006 : 788116-835370 : positive

Family

Gene family
HOM03D001767
(94 genes in 31 species)
specific family
Subfamily
ORTHO03D008723
(29 genes in 24 species)
specific family

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Descriptions

Description (AnnoMine)
DNA ligase 1
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameevm_27.TU.AmTr_v1.0_scaffold00006.28
idevm_27.model.AmTr_v1.0_scaffold00006.28

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006260IEAInterProDNA replication
GO:0006281IEAInterProDNA repair
GO:0051103IEAInterProDNA ligation involved in DNA repair
GO:0006310IEAInterProDNA recombination
GO:0009845ISOPLAZA Integrative Orthologyseed germinationAT1G66730

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0016787IEAInterProhydrolase activity
GO:0003909IEAInterProDNA ligase activity
GO:0003910IEAInterProDNA ligase (ATP) activity
GO:0005524IEAInterProATP binding
GO:0003677IEAInterProDNA binding
GO:0016886IEAPLAZA Homologyligase activity, forming phosphoric ester bondsHOM03D001767

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000977DNA ligase, ATP-dependent
IPR001279Beta-lactamase-like
IPR012308DNA ligase, ATP-dependent, N-terminal
IPR012310DNA ligase, ATP-dependent, central
IPR016059DNA ligase, ATP-dependent, conserved site
IPR012340Nucleic acid-binding, OB-fold
IPR012309DNA ligase, ATP-dependent, C-terminal
IPR011084DNA repair metallo-beta-lactamase

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.