Gene: ATR_00004G01680 (Amborella trichopoda)

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Gene Identifier
ATR_00004G01680
Transcript Identifier
ATR_00004G01680.1
Gene Type
Coding gene
Location
scaffold00004 : 2436144-2438767 : positive

Family

Gene family
HOM03D001354
(115 genes in 29 species)
specific family
Subfamily
ORTHO03D005988
(33 genes in 26 species)
specific family

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Descriptions

Description (AnnoMine)
protein ligase RHF2A
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameevm_27.TU.AmTr_v1.0_scaffold00004.168
idevm_27.model.AmTr_v1.0_scaffold00004.168

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009561ISOPLAZA Integrative OrthologymegagametogenesisAT4G14220 AT5G22000
GO:0010498ISOPLAZA Integrative Orthologyproteasomal protein catabolic processAT4G14220
GO:0016567ISOPLAZA Integrative Orthologyprotein ubiquitinationAT4G14220
GO:0051726ISOPLAZA Integrative Orthologyregulation of cell cycleAT4G14220 AT5G22000
GO:0055046ISOPLAZA Integrative OrthologymicrogametogenesisAT4G14220 AT5G22000
GO:0051603ISOPLAZA Integrative Orthologyproteolysis involved in cellular protein catabolic processAT5G22000

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding
GO:0008270IEAInterProzinc ion binding
GO:0004842ISOPLAZA Integrative Orthologyubiquitin-protein ligase activityAT4G14220

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0016020ISOPLAZA Integrative OrthologymembraneAT4G14220
GO:0005886ISOPLAZA Integrative Orthologyplasma membraneAT5G22000

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001841Zinc finger, RING-type
IPR013083Zinc finger, RING/FYVE/PHD-type

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.