Gene: ATR_00003G01970 (Amborella trichopoda)

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Gene Identifier
ATR_00003G01970
Transcript Identifier
ATR_00003G01970.1
Gene Type
Coding gene
Location
scaffold00003 : 4113101-4117605 : negative

Family

Gene family
HOM03D002469
(73 genes in 31 species)
specific family
Subfamily
ORTHO03D005398
(34 genes in 30 species)
specific family

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Descriptions

Description (AnnoMine)
Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameevm_27.TU.AmTr_v1.0_scaffold00003.202
idevm_27.model.AmTr_v1.0_scaffold00003.202

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0044237IEAInterProcellular metabolic process
GO:0005996ISOPLAZA Integrative Orthologymonosaccharide metabolic processAT1G09340
GO:0045727ISOPLAZA Integrative Orthologypositive regulation of translationAT1G09340
GO:0045893ISOPLAZA Integrative Orthologypositive regulation of transcription, DNA-dependentAT1G09340
GO:0032544ISOPLAZA Integrative Orthologyplastid translationAT1G09340
GO:0006364ISOPLAZA Integrative OrthologyrRNA processingAT1G09340
GO:0009658ISOPLAZA Integrative Orthologychloroplast organizationAT1G09340
GO:0007623ISOPLAZA Integrative Orthologycircadian rhythmAT1G09340
GO:0042742ISOPLAZA Integrative Orthologydefense response to bacteriumAT1G09340
GO:0009409ISOPLAZA Integrative Orthologyresponse to coldAT1G09340
GO:0042631ISOPLAZA Integrative Orthologycellular response to water deprivationAT1G09340
GO:0009611ISOPLAZA Integrative Orthologyresponse to woundingAT1G09340

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0050662IEAInterProcoenzyme binding
GO:0003824IEAInterProcatalytic activity
GO:0010297ISOPLAZA Integrative Orthologyheteropolysaccharide bindingAT1G09340
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT1G09340
GO:0003723ISOPLAZA Integrative OrthologyRNA bindingAT1G09340

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009506ISOPLAZA Integrative OrthologyplasmodesmaAT1G09340
GO:0048046ISOPLAZA Integrative OrthologyapoplastAT1G09340
GO:0005840ISOPLAZA Integrative OrthologyribosomeAT1G09340
GO:0005777ISOPLAZA Integrative OrthologyperoxisomeAT1G09340
GO:0016020ISOPLAZA Integrative OrthologymembraneAT1G09340
GO:0010319ISOPLAZA Integrative OrthologystromuleAT1G09340
GO:0010287ISOPLAZA Integrative OrthologyplastoglobuleAT1G09340
GO:0009570ISOPLAZA Integrative Orthologychloroplast stromaAT1G09340
GO:0005773ISOPLAZA Integrative OrthologyvacuoleAT1G09340
GO:0009507ISOPLAZA Integrative OrthologychloroplastAT1G09340
GO:0009941ISOPLAZA Integrative Orthologychloroplast envelopeAT1G09340

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR016040NAD(P)-binding domain
IPR001509NAD-dependent epimerase/dehydratase

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.