Gene: ATR_00001G02250 (Amborella trichopoda)

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Gene Identifier
ATR_00001G02250
Transcript Identifier
ATR_00001G02250.1
Gene Type
Coding gene
Location
scaffold00001 : 4454641-4467716 : negative

Family

Gene family
HOM03D000291
(391 genes in 31 species)
specific family
Subfamily
ORTHO03D000719
(69 genes in 28 species)
specific family

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Descriptions

Description (AnnoMine)
TAF5-like RNA polymerase II p300/CBP-associated factor-associated
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameevm_27.TU.AmTr_v1.0_scaffold00001.228
idevm_27.model.AmTr_v1.0_scaffold00001.228

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0016192IEAInterProvesicle-mediated transport
GO:0006886IEAInterProintracellular protein transport
GO:0009987IEAPLAZA Homologycellular processHOM03D000291

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IEAInterProprotein binding
GO:0005198IEAInterProstructural molecule activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0030126IEAInterProCOPI vesicle coat
GO:0030117IEAInterPromembrane coat
GO:0005829ISOPLAZA Integrative OrthologycytosolAT2G21390 AT1G62020
GO:0016020ISOPLAZA Integrative OrthologymembraneAT2G21390 AT1G62020
GO:0005886ISOPLAZA Integrative Orthologyplasma membraneAT1G62020
GO:0032991IEAPLAZA Homologymacromolecular complexHOM03D000291
GO:0044424IEAPLAZA Homologyintracellular partHOM03D000291

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR020472G-protein beta WD-40 repeat
IPR001680WD40 repeat
IPR017986WD40-repeat-containing domain
IPR010714Coatomer, alpha subunit, C-terminal
IPR019775WD40 repeat, conserved site
IPR006692Coatomer, WD associated region
IPR015943WD40/YVTN repeat-like-containing domain

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.