Gene: ATR_00001G00890 (Amborella trichopoda)

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Gene Identifier
ATR_00001G00890
Transcript Identifier
ATR_00001G00890.1
Gene Type
Coding gene
Location
scaffold00001 : 1571623-1584366 : positive

Family

Gene family
HOM03D004126
(46 genes in 29 species)
specific family
Subfamily
ORTHO03D003695
(37 genes in 29 species)
specific family

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Descriptions

Description (AnnoMine)
biosynthesis protein PYRR, chloroplastic
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameevm_27.TU.AmTr_v1.0_scaffold00001.89
idevm_27.model.AmTr_v1.0_scaffold00001.89

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0055114IEAInterProoxidation-reduction process
GO:0009231IEAInterProriboflavin biosynthetic process
GO:0046443ISOPLAZA Integrative OrthologyFAD metabolic processAT3G47390
GO:0009658ISOPLAZA Integrative Orthologychloroplast organizationAT3G47390
GO:0009644ISOPLAZA Integrative Orthologyresponse to high light intensityAT3G47390
GO:0042727IEAPLAZA Homologyflavin-containing compound biosynthetic processHOM03D004126
GO:0006771IEAPLAZA Homologyriboflavin metabolic processHOM03D004126

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0050661IEAInterProNADP binding
GO:0008835IEAInterProdiaminohydroxyphosphoribosylaminopyrimidine deaminase activity
GO:0003824IEAInterProcatalytic activity
GO:0008703IEAInterPro5-amino-6-(5-phosphoribosylamino)uracil reductase activity
GO:0008270IEAPLAZA Homologyzinc ion bindingHOM03D004126

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009507ISOPLAZA Integrative OrthologychloroplastAT3G47390

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012816Conserved hypothetical protein CHP02464
IPR016193Cytidine deaminase-like
IPR002734Bacterial bifunctional deaminase-reductase, C-terminal
IPR011549Riboflavin-specific deaminase, C-terminal
IPR004794Riboflavin biosynthesis protein RibD
IPR024072Dihydrofolate reductase-like domain

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.