Gene: ATR_00001G00450 (Amborella trichopoda)

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Gene Identifier
ATR_00001G00450
Transcript Identifier
ATR_00001G00450.1
Gene Type
Coding gene
Location
scaffold00001 : 736858-739244 : negative

Family

Gene family
HOM03D001748
(94 genes in 30 species)
specific family
Subfamily
ORTHO03D002324
(42 genes in 27 species)
specific family

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Descriptions

Description (AnnoMine)
60S ribosomal protein L23A
Only text-mined description found ...
Description of best ortholog(s):

Identifiers

Identifier Name
GeneNameevm_27.TU.AmTr_v1.0_scaffold00001.45
idevm_27.model.AmTr_v1.0_scaffold00001.45

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006412IEAInterProtranslation
GO:0009644ISOPLAZA Integrative Orthologyresponse to high light intensityAT3G55280
GO:0009409ISOPLAZA Integrative Orthologyresponse to coldAT3G55280
GO:0006979ISOPLAZA Integrative Orthologyresponse to oxidative stressAT3G55280

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003735IEAInterProstructural constituent of ribosome
GO:0000166IEAInterPronucleotide binding
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03D001748

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005622IEAInterProintracellular
GO:0005840IEAInterProribosome
GO:0022625ISOPLAZA Integrative Orthologycytosolic large ribosomal subunitAT3G55280
GO:0016020ISOPLAZA Integrative OrthologymembraneAT3G55280
GO:0022626ISOPLAZA Integrative Orthologycytosolic ribosomeAT3G55280

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013025Ribosomal protein L25/L23
IPR012677Nucleotide-binding, alpha-beta plait
IPR012678Ribosomal protein L23/L15e core domain
IPR001014Ribosomal protein L23/L25, conserved site
IPR005633Ribosomal protein L23/L25, N-terminal
IPR019985Ribosomal protein L23

No MapMan annotations defined for this gene.
No SignalP domains detected for this gene.