Gene: AT5G65200 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G65200
Transcript Identifier
AT5G65200.1
Gene Type
Coding gene
Location
5 : 26048173-26049843 : negative

Family

Gene family
HOM03D000061
(1331 genes in 31 species)
specific family
Subfamily
ORTHO03D011366
(23 genes in 18 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
plant U-box 38
Curated Summary
Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.
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Identifiers

Identifier Name
aliasPUB38
aliasplant U-box 38
aliasATPUB38
aliasARABIDOPSIS THALIANA PLANT U-BOX 38
uniprotQ9FJP6

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0016567IDA, IEAGene Ontologyprotein ubiquitination1
GO:0044260IEAPLAZA Homologycellular macromolecule metabolic processHOM03D000061
GO:0043170IEAPLAZA Homologymacromolecule metabolic processHOM03D000061
GO:0044237IEAPLAZA Homologycellular metabolic processHOM03D000061
GO:0044238IEAPLAZA Homologyprimary metabolic processHOM03D000061
GO:0009987IEAPLAZA Homologycellular processHOM03D000061
GO:0032446IEAPLAZA Homologyprotein modification by small protein conjugationHOM03D000061
GO:0070647IEAPLAZA Homologyprotein modification by small protein conjugation or removalHOM03D000061
GO:0043412IEAPLAZA Homologymacromolecule modificationHOM03D000061
GO:0071704IEAPLAZA Homologyorganic substance metabolic processHOM03D000061
GO:0044267IEAPLAZA Homologycellular protein metabolic processHOM03D000061
GO:0006464IEAPLAZA Homologycellular protein modification processHOM03D000061
GO:0036211IEAPLAZA Homologyprotein modification processHOM03D000061
GO:0019538IEAPLAZA Homologyprotein metabolic processHOM03D000061

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004842IDA, IEA, UniProtubiquitin-protein ligase activity1 2 3 4
GO:0070696IPIGene Ontologytransmembrane receptor protein serine/threonine kinase binding1
GO:0005515IEAInterProprotein binding
GO:0005488IEAInterProbinding
GO:0016874IEAPLAZA Homologyligase activityHOM03D000061
GO:0019787IEAPLAZA Homologysmall conjugating protein ligase activityHOM03D000061
GO:0016881IEAPLAZA Homologyacid-amino acid ligase activityHOM03D000061
GO:0016879IEAPLAZA Homologyligase activity, forming carbon-nitrogen bondsHOM03D000061

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISMGene Ontologynucleus1
GO:0000151IEAUniProtubiquitin ligase complex1 2 3
GO:0005622IEAPLAZA HomologyintracellularHOM03D000061
GO:0032991IEAPLAZA Homologymacromolecular complexHOM03D000061
GO:1902494IEAPLAZA Homologycatalytic complexHOM03D000061
GO:0005623IEAPLAZA HomologycellHOM03D000061
GO:0043234IEAPLAZA Homologyprotein complexHOM03D000061
GO:0044464IEAPLAZA Homologycell partHOM03D000061
GO:0044424IEAPLAZA Homologyintracellular partHOM03D000061

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000225Armadillo
IPR003613U box domain
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR011989Armadillo-like helical
IPR016024Armadillo-type fold

Mapman id Description
29.5.11.4.2protein.degradation.ubiquitin.E3.RING
No SignalP domains detected for this gene.