PLAZA 3.0 Dicots gene overview : AT5G65200

Gene: AT5G65200 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G65200
Transcript Identifier: AT5G65200.1
Gene Type: Coding gene
Location: 5 : 26048173-26049843 : negative

Family

Gene family: HOM03D000061
(1331 genes in 31 species)
specific family
Subfamily: ORTHO03D011366
(23 genes in 18 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: plant U-box 38

Curated Summary: Encodes a protein containing a U-box and an ARM domain. This protein has E3 ubiquitin ligase activity based on in vitro assays.

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Identifiers

Identifier	Name
alias	PUB38
alias	plant U-box 38
alias	ATPUB38
alias	ARABIDOPSIS THALIANA PLANT U-BOX 38
uniprot	Q9FJP6

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0016567	IDA, IEA	Gene Ontology	protein ubiquitination	1
GO:0044260	IEA	PLAZA Homology	cellular macromolecule metabolic process	HOM03D000061
GO:0043170	IEA	PLAZA Homology	macromolecule metabolic process	HOM03D000061
GO:0044237	IEA	PLAZA Homology	cellular metabolic process	HOM03D000061
GO:0044238	IEA	PLAZA Homology	primary metabolic process	HOM03D000061
GO:0009987	IEA	PLAZA Homology	cellular process	HOM03D000061
GO:0032446	IEA	PLAZA Homology	protein modification by small protein conjugation	HOM03D000061
GO:0070647	IEA	PLAZA Homology	protein modification by small protein conjugation or removal	HOM03D000061
GO:0043412	IEA	PLAZA Homology	macromolecule modification	HOM03D000061
GO:0071704	IEA	PLAZA Homology	organic substance metabolic process	HOM03D000061
GO:0044267	IEA	PLAZA Homology	cellular protein metabolic process	HOM03D000061
GO:0006464	IEA	PLAZA Homology	cellular protein modification process	HOM03D000061
GO:0036211	IEA	PLAZA Homology	protein modification process	HOM03D000061
GO:0019538	IEA	PLAZA Homology	protein metabolic process	HOM03D000061

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0004842	IDA, IEA,	UniProt	ubiquitin-protein ligase activity	1 2 3 4
GO:0070696	IPI	Gene Ontology	transmembrane receptor protein serine/threonine kinase binding	1
GO:0005515	IEA	InterPro	protein binding
GO:0005488	IEA	InterPro	binding
GO:0016874	IEA	PLAZA Homology	ligase activity	HOM03D000061
GO:0019787	IEA	PLAZA Homology	small conjugating protein ligase activity	HOM03D000061
GO:0016881	IEA	PLAZA Homology	acid-amino acid ligase activity	HOM03D000061
GO:0016879	IEA	PLAZA Homology	ligase activity, forming carbon-nitrogen bonds	HOM03D000061

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	ISM	Gene Ontology	nucleus	1
GO:0000151	IEA	UniProt	ubiquitin ligase complex	1 2 3
GO:0005622	IEA	PLAZA Homology	intracellular	HOM03D000061
GO:0032991	IEA	PLAZA Homology	macromolecular complex	HOM03D000061
GO:1902494	IEA	PLAZA Homology	catalytic complex	HOM03D000061
GO:0005623	IEA	PLAZA Homology	cell	HOM03D000061
GO:0043234	IEA	PLAZA Homology	protein complex	HOM03D000061
GO:0044464	IEA	PLAZA Homology	cell part	HOM03D000061
GO:0044424	IEA	PLAZA Homology	intracellular part	HOM03D000061

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR000225	Armadillo
IPR003613	U box domain
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR011989	Armadillo-like helical
IPR016024	Armadillo-type fold

Mapman id	Description
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING

No SignalP domains detected for this gene.