Gene: AT5G63310 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G63310
Transcript Identifier
AT5G63310.1
Gene Type
Coding gene
Location
5 : 25372122-25373838 : negative

Family

Gene family
HOM03D000794
(177 genes in 31 species)
specific family
Subfamily
ORTHO03D003414
(38 genes in 31 species)
specific family

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Descriptions

Description
nucleoside diphosphate kinase 2
Curated Summary
Maintains intracellular dNTP levels except ATP. Plays a role in response to oxidative stress and UV. Involved in phytochrome-mediated light signaling. Participates in auxin-regulated processes, partly through the modulation of auxin transport. H-bonding with His-197 inside the nucleotide-binding pocket is critical for NDPK2 functioning.
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Identifiers

Identifier Name
aliasNDPK IA IA
aliasNDPK IA
aliasARABIDOPSIS NUCLEOSIDE DIPHOSPHATE KINASE 2
aliasnucleoside diphosphate kinase 2
aliasATNDPK2
aliasNDPK2
aliasNDP KINASE 1A
aliasNDPK1A
aliasNUCLEOSIDE DIPHOSPHATE KINASE IA
uniprotO64903

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009585IMPUniProtred, far-red light phototransduction1 2 3 4 5 6 7 8 9 10
GO:0042542IMP, IEPUniProtresponse to hydrogen peroxide1 2 3 4 5 6 7 8 9 10 11
GO:0009411TASUniProtresponse to UV1 2 3 4 5 6 7 8 9 10
GO:0009734IMPUniProtauxin mediated signaling pathway1 2 3 4 5 6 7 8 9 10
GO:0019288RCAGene Ontologyisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1
GO:0006241IEAUniProtCTP biosynthetic process1 2 3 4 5 6 7 8 9
GO:0006228IEAUniProtUTP biosynthetic process1 2 3 4 5 6 7 8 9
GO:0006165IEAInterPronucleoside diphosphate phosphorylation
GO:0006183IEAUniProtGTP biosynthetic process1 2 3 4 5 6 7 8 9
GO:0046129IEAPLAZA Homologypurine ribonucleoside biosynthetic processHOM03D000794
GO:0009201IEAPLAZA Homologyribonucleoside triphosphate biosynthetic processHOM03D000794
GO:0009206IEAPLAZA Homologypurine ribonucleoside triphosphate biosynthetic processHOM03D000794
GO:0009205IEAPLAZA Homologypurine ribonucleoside triphosphate metabolic processHOM03D000794
GO:0009208IEAPLAZA Homologypyrimidine ribonucleoside triphosphate metabolic processHOM03D000794
GO:0046128IEAPLAZA Homologypurine ribonucleoside metabolic processHOM03D000794
GO:0006753IEAPLAZA Homologynucleoside phosphate metabolic processHOM03D000794
GO:0046132IEAPLAZA Homologypyrimidine ribonucleoside biosynthetic processHOM03D000794
GO:0046134IEAPLAZA Homologypyrimidine nucleoside biosynthetic processHOM03D000794
GO:0046131IEAPLAZA Homologypyrimidine ribonucleoside metabolic processHOM03D000794
GO:0042455IEAPLAZA Homologyribonucleoside biosynthetic processHOM03D000794
GO:0042451IEAPLAZA Homologypurine nucleoside biosynthetic processHOM03D000794
GO:1901293IEAPLAZA Homologynucleoside phosphate biosynthetic processHOM03D000794
GO:0019637IEAPLAZA Homologyorganophosphate metabolic processHOM03D000794
GO:0019693IEAPLAZA Homologyribose phosphate metabolic processHOM03D000794
GO:1901068IEAPLAZA Homologyguanosine-containing compound metabolic processHOM03D000794
GO:0009260IEAPLAZA Homologyribonucleotide biosynthetic processHOM03D000794
GO:0042278IEAPLAZA Homologypurine nucleoside metabolic processHOM03D000794
GO:0006213IEAPLAZA Homologypyrimidine nucleoside metabolic processHOM03D000794
GO:1901566IEAPLAZA Homologyorganonitrogen compound biosynthetic processHOM03D000794
GO:0009199IEAPLAZA Homologyribonucleoside triphosphate metabolic processHOM03D000794
GO:0055086IEAPLAZA Homologynucleobase-containing small molecule metabolic processHOM03D000794
GO:0046390IEAPLAZA Homologyribose phosphate biosynthetic processHOM03D000794
GO:1901070IEAPLAZA Homologyguanosine-containing compound biosynthetic processHOM03D000794
GO:0072521IEAPLAZA Homologypurine-containing compound metabolic processHOM03D000794
GO:0009116IEAPLAZA Homologynucleoside metabolic processHOM03D000794
GO:0072522IEAPLAZA Homologypurine-containing compound biosynthetic processHOM03D000794
GO:0009119IEAPLAZA Homologyribonucleoside metabolic processHOM03D000794
GO:0072527IEAPLAZA Homologypyrimidine-containing compound metabolic processHOM03D000794
GO:0009117IEAPLAZA Homologynucleotide metabolic processHOM03D000794
GO:0009259IEAPLAZA Homologyribonucleotide metabolic processHOM03D000794
GO:0006163IEAPLAZA Homologypurine nucleotide metabolic processHOM03D000794
GO:0072528IEAPLAZA Homologypyrimidine-containing compound biosynthetic processHOM03D000794
GO:0006164IEAPLAZA Homologypurine nucleotide biosynthetic processHOM03D000794
GO:0009148IEAPLAZA Homologypyrimidine nucleoside triphosphate biosynthetic processHOM03D000794
GO:0009147IEAPLAZA Homologypyrimidine nucleoside triphosphate metabolic processHOM03D000794
GO:0009145IEAPLAZA Homologypurine nucleoside triphosphate biosynthetic processHOM03D000794
GO:0009144IEAPLAZA Homologypurine nucleoside triphosphate metabolic processHOM03D000794
GO:0006221IEAPLAZA Homologypyrimidine nucleotide biosynthetic processHOM03D000794
GO:0009142IEAPLAZA Homologynucleoside triphosphate biosynthetic processHOM03D000794
GO:0006220IEAPLAZA Homologypyrimidine nucleotide metabolic processHOM03D000794
GO:0009141IEAPLAZA Homologynucleoside triphosphate metabolic processHOM03D000794
GO:0046036IEAPLAZA HomologyCTP metabolic processHOM03D000794
GO:0009132IEAPLAZA Homologynucleoside diphosphate metabolic processHOM03D000794
GO:1901657IEAPLAZA Homologyglycosyl compound metabolic processHOM03D000794
GO:1901659IEAPLAZA Homologyglycosyl compound biosynthetic processHOM03D000794
GO:0046939IEAPLAZA Homologynucleotide phosphorylationHOM03D000794
GO:0009163IEAPLAZA Homologynucleoside biosynthetic processHOM03D000794
GO:0009220IEAPLAZA Homologypyrimidine ribonucleotide biosynthetic processHOM03D000794
GO:0009165IEAPLAZA Homologynucleotide biosynthetic processHOM03D000794
GO:0090407IEAPLAZA Homologyorganophosphate biosynthetic processHOM03D000794
GO:0046039IEAPLAZA HomologyGTP metabolic processHOM03D000794
GO:0009218IEAPLAZA Homologypyrimidine ribonucleotide metabolic processHOM03D000794
GO:0046051IEAPLAZA HomologyUTP metabolic processHOM03D000794
GO:0009150IEAPLAZA Homologypurine ribonucleotide metabolic processHOM03D000794
GO:1901137IEAPLAZA Homologycarbohydrate derivative biosynthetic processHOM03D000794
GO:0009152IEAPLAZA Homologypurine ribonucleotide biosynthetic processHOM03D000794
GO:1901135IEAPLAZA Homologycarbohydrate derivative metabolic processHOM03D000794
GO:0009209IEAPLAZA Homologypyrimidine ribonucleoside triphosphate biosynthetic processHOM03D000794

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004550IDA, ISS, TASIEA, UniProtnucleoside diphosphate kinase activity1 2 3 4 5 6 7 8 9 10 11 12
GO:0005524IEA, ISSUniProtATP binding1 2 3 4 5 6 7 8 9 10
GO:0005515IPIGene Ontologyprotein binding1
GO:0046872IEAUniProtmetal ion binding1 2 3 4 5 6 7 8 9
GO:0016776IEAPLAZA Homologyphosphotransferase activity, phosphate group as acceptorHOM03D000794
GO:0019205IEAPLAZA Homologynucleobase-containing compound kinase activityHOM03D000794

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009507IDA, ISMGene Ontologychloroplast1 2
GO:0005634IDAUniProtnucleus1 2 3 4 5 6 7 8 9 10
GO:0005737IDAGene Ontologycytoplasm1
GO:0009941IDAUniProtchloroplast envelope1 2 3 4 5 6 7 8 9 10
GO:0009570IDAUniProtchloroplast stroma1 2 3 4 5 6 7 8 9 10
GO:0009579IDAUniProtthylakoid1 2 3 4 5 6 7 8 9 10

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001564Nucleoside diphosphate kinase
IPR023005Nucleoside diphosphate kinase, active site

Mapman id Description
23.4.10nucleotide metabolism.phosphotransfer and pyrophosphatases.nucleoside diphosphate kinase
No SignalP domains detected for this gene.