Gene: AT5G56680 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G56680
Transcript Identifier
AT5G56680.1
Gene Type
Coding gene
Location
5 : 22936645-22938841 : positive

Family

Gene family
HOM03D001110
(138 genes in 31 species)
specific family
Subfamily
ORTHO03D010964
(24 genes in 20 species)
specific family

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Descriptions

Description
Class II aminoacyl-tRNA and biotin synthetases superfamily protein
Curated Summary
Encodes a putative cytosolic asparaginyl-tRNA synthetase.
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Identifiers

Identifier Name
aliasEMBRYO DEFECTIVE 2755
aliasSYNC1 ARATH
aliasSYNC1
aliasEMB2755
uniprotQ9SW96

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009793IMP, NAS, UniProtembryo development ending in seed dormancy1 2 3 4
GO:0046686IEPUniProtresponse to cadmium ion1 2 3
GO:0006421IEAUniProtasparaginyl-tRNA aminoacylation1 2
GO:0006418IEAInterProtRNA aminoacylation for protein translation
GO:0043038IEAPLAZA Homologyamino acid activationHOM03D001110
GO:0043039IEAPLAZA HomologytRNA aminoacylationHOM03D001110

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000166IEAInterPronucleotide binding
GO:0004816IEAUniProtasparagine-tRNA ligase activity1 2
GO:0003676IEAUniProtnucleic acid binding1 2
GO:0005524IEAUniProtATP binding1 2
GO:0004812IEAInterProaminoacyl-tRNA ligase activity
GO:0016875IEAPLAZA Homologyligase activity, forming carbon-oxygen bondsHOM03D001110
GO:0016876IEAPLAZA Homologyligase activity, forming aminoacyl-tRNA and related compoundsHOM03D001110

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737ISM, IEAGene Ontologycytoplasm1
GO:0005739IDAUniProtmitochondrion1 2 3
GO:0009507IDAUniProtchloroplast1 2 3
GO:0005829IDAUniProtcytosol1 2 3

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR002312Aspartyl/Asparaginyl-tRNA synthetase, class IIb
IPR006195Aminoacyl-tRNA synthetase, class II
IPR004522Asparagine-tRNA ligase
IPR018150Aminoacyl-tRNA synthetase, class II (D/K/N)-like
IPR009068S15/NS1, RNA-binding
IPR000738WHEP-TRS
IPR004365OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR012340Nucleic acid-binding, OB-fold
IPR004364Aminoacyl-tRNA synthetase, class II (D/K/N)

Mapman id Description
29.1.22protein.aa activation.asparagine-tRNA ligase
No SignalP domains detected for this gene.