Gene: AT5G47010 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G47010
Transcript Identifier
AT5G47010.1
Gene Type
Coding gene
Location
5 : 19072009-19078856 : positive

Family

Gene family
HOM03D000186
(550 genes in 31 species)
specific family
Subfamily
ORTHO03D007204
(31 genes in 23 species)
specific family

Loading...please wait

Descriptions

Description
RNA helicase, putative
Curated Summary
Required for nonsense-mediated mRNA decay. Involved in RNA interference. lba1 mutants has reduced sugar-induced expression of Atb- amylase, is hypersensitive to glucose and abscisic acid and resistant to mannose, and shows early flowering, short day-sensitive growth, and seed germination phenotypes.
Show more...

Identifiers

Identifier Name
aliasLBA1
aliasUPF1
aliasLOW-LEVEL BETA-AMYLASE 1
aliasATUPF1
uniprotQ9FJR0

Toolbox

Explore

View

 

Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010182IMP, RCA, UniProtsugar mediated signaling pathway1 2 3 4 5 6 7 8 9 10
GO:0016246IGIUniProtRNA interference1 2 3 4 5 6 7 8 9
GO:0000184IMP, IEA, UniProtnuclear-transcribed mRNA catabolic process, nonsense-mediated decay1 2 3 4 5 6 7 8 9
GO:0042742IMPUniProtdefense response to bacterium1 2 3 4 5 6 7 8 9
GO:0009755RCAGene Ontologyhormone-mediated signaling pathway1
GO:0048825RCAGene Ontologycotyledon development1
GO:0009744IGIUniProtresponse to sucrose1 2 3 4 5 6 7 8 9
GO:0009867IMPUniProtjasmonic acid mediated signaling pathway1 2 3 4 5 6 7 8
GO:0048571IMPUniProtlong-day photoperiodism1 2 3 4 5 6 7 8
GO:0009611IMPUniProtresponse to wounding1 2 3 4 5 6 7 8
GO:0009863IMPUniProtsalicylic acid mediated signaling pathway1 2 3 4 5 6 7 8

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003724ISSGene OntologyRNA helicase activity1
GO:0004386IEAUniProthelicase activity1 2 3 4 5 6 7 8
GO:0008270IEAUniProtzinc ion binding1 2 3 4 5 6 7 8
GO:0005524IEAUniProtATP binding1 2 3 4 5 6 7 8
GO:0003677IEAUniProtDNA binding1 2 3 4 5 6 7 8
GO:0003723IEAUniProtRNA binding1 2 3 4 5 6 7 8
GO:0017111IEAPLAZA Homologynucleoside-triphosphatase activityHOM03D000186

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737IDA, ISM, IEAGene Ontologycytoplasm1 2
GO:0005886IDAUniProtplasma membrane1 2 3 4 5 6 7 8 9
GO:0005829IDA, RCA, UniProtcytosol1 2 3 4 5 6 7 8 9 10
GO:0009506IDAUniProtplasmodesma1 2 3 4 5 6 7 8 9
GO:0000932IDAUniProtcytoplasmic mRNA processing body1 2 3 4 5 6 7 8 9

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR014001Helicase, superfamily 1/2, ATP-binding domain
IPR018999RNA helicase UPF1, UPF2-interacting domain

Mapman id Description
27.1.2RNA.processing.RNA helicase
No SignalP domains detected for this gene.