Gene: AT5G42270 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G42270
Transcript Identifier
AT5G42270.1
Gene Type
Coding gene
Location
5 : 16902659-16905102 : positive

Family

Gene family
HOM03D000022
(2181 genes in 31 species)
specific family
Subfamily
ORTHO03D005645
(33 genes in 26 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
FtsH extracellular protease family
Curated Summary
VAR1 contains a conserved motif for ATPase and a metalloprotease characteristic to FtsH proteins, and is targeted into chloroplasts. A VAR1-fusion protein synthesized in vitro exhibited ATPase activity and partial metalloprotease activity. This protein is located to the thylakoid membrane and forms a complex with VAR2. FtsH1 (VAR1) and FtsH5 are interchangeable in thylakoid membranes. Phosphorylation of this protein is dependent on calcium.
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Identifiers

Identifier Name
aliasFTSH5
aliasVARIEGATED 1
aliasVAR1
uniprotQ9FH02

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010304TAS, RCAUniProtPSII associated light-harvesting complex II catabolic process1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0010205IMPUniProtphotoinhibition1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0030163IDAGene Ontologyprotein catabolic process1
GO:0006098RCAGene Ontologypentose-phosphate shunt1
GO:0009773RCAGene Ontologyphotosynthetic electron transport in photosystem I1
GO:0019761RCAGene Ontologyglucosinolate biosynthetic process1
GO:0006508IEAUniProtproteolysis1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0007275IEAUniProtmulticellular organismal development1 2 3 4 5 6 7 8 9 10 11 12 13

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008237ISSGene Ontologymetallopeptidase activity1
GO:0016887IDA, ISS, UniProtATPase activity1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0004176ISSGene OntologyATP-dependent peptidase activity1
GO:0017111IEAInterPronucleoside-triphosphatase activity
GO:0000166IEAInterPronucleotide binding
GO:0004222IEAUniProtmetalloendopeptidase activity1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0005524IEAUniProtATP binding1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0046872IEAUniProtmetal ion binding1 2 3 4 5 6 7 8 9 10 11 12 13
GO:0032555IEAPLAZA Homologypurine ribonucleotide bindingHOM03D000022
GO:0016817IEAPLAZA Homologyhydrolase activity, acting on acid anhydridesHOM03D000022
GO:0032553IEAPLAZA Homologyribonucleotide bindingHOM03D000022
GO:0043168IEAPLAZA Homologyanion bindingHOM03D000022
GO:0043167IEAPLAZA Homologyion bindingHOM03D000022
GO:0035639IEAPLAZA Homologypurine ribonucleoside triphosphate bindingHOM03D000022
GO:0097367IEAPLAZA Homologycarbohydrate derivative bindingHOM03D000022
GO:0003824IEAPLAZA Homologycatalytic activityHOM03D000022
GO:0016818IEAPLAZA Homologyhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydridesHOM03D000022
GO:0032559IEAPLAZA Homologyadenyl ribonucleotide bindingHOM03D000022
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03D000022
GO:0016462IEAPLAZA Homologypyrophosphatase activityHOM03D000022
GO:0030554IEAPLAZA Homologyadenyl nucleotide bindingHOM03D000022
GO:0001882IEAPLAZA Homologynucleoside bindingHOM03D000022
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03D000022
GO:0017076IEAPLAZA Homologypurine nucleotide bindingHOM03D000022
GO:0036094IEAPLAZA Homologysmall molecule bindingHOM03D000022
GO:0032549IEAPLAZA Homologyribonucleoside bindingHOM03D000022
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03D000022
GO:0005488IEAPLAZA HomologybindingHOM03D000022
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03D000022
GO:0001883IEAPLAZA Homologypurine nucleoside bindingHOM03D000022
GO:0032550IEAPLAZA Homologypurine ribonucleoside bindingHOM03D000022

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009507IDA, ISMGene Ontologychloroplast1 2
GO:0009941IDAUniProtchloroplast envelope1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0009535IDAUniProtchloroplast thylakoid membrane1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0009579IDAGene Ontologythylakoid1
GO:0009534IDAGene Ontologychloroplast thylakoid1
GO:0016020IEAInterPromembrane
GO:0016021IEAUniProtintegral to membrane1 2 3 4 5 6 7 8 9 10 11 12 13

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR003593AAA+ ATPase domain
IPR003960ATPase, AAA-type, conserved site
IPR005936Peptidase, FtsH
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR000642Peptidase M41
IPR003959ATPase, AAA-type, core

Mapman id Description
29.5.7protein.degradation.metalloprotease
No SignalP domains detected for this gene.