Gene: AT5G35550 (Arabidopsis thaliana)

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Gene Identifier
AT5G35550
Transcript Identifier
AT5G35550.1
Gene Type
Coding gene
Location
5 : 13726807-13727729 : positive

Family

Gene family
HOM03D000008
(3494 genes in 30 species)
specific family
Subfamily
ORTHO03D011680
(22 genes in 18 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
Duplicated homeodomain-like superfamily protein
Curated Summary
TT2 encodes a R2R3 MYB domain putative transcription factor that acts as a key determinant in the proanthocyanidin accumulation of developing seed. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium.
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Identifiers

Identifier Name
aliasATMYB123
aliasTRANSPARENT TESTA 2
aliasATTT2
aliasTT2
aliasMYB DOMAIN PROTEIN 123
aliasMYB123
uniprotQ9FJA2

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010023IMPUniProtproanthocyanidin biosynthetic process1 2 3 4 5 6 7
GO:0006355ISSGene Ontologyregulation of transcription, DNA-dependent1
GO:0006633IMPUniProtfatty acid biosynthetic process1 2 3 4 5 6 7
GO:0006970IMPUniProtresponse to osmotic stress1 2 3 4 5 6 7
GO:0009813IEAUniProtflavonoid biosynthetic process1 2 3 4 5 6
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5 6

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEA, ISSUniProtDNA binding1 2 3 4 5 6 7
GO:0003700ISSUniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5 6 7
GO:0003682IEAUniProtchromatin binding1 2 3 4 5 6
GO:0005524IEAUniProtATP binding1 2 3 4 5 6
GO:0005488IEAPLAZA HomologybindingHOM03D000008
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03D000008
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03D000008
GO:0003676IEAPLAZA Homologynucleic acid bindingHOM03D000008

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISM, UniProtnucleus1 2 3 4 5 6 7 8

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR009057Homeodomain-like
IPR017930Myb domain
IPR001005SANT/Myb domain

Mapman id Description
27.3.25RNA.regulation of transcription.MYB domain transcription factor family
No SignalP domains detected for this gene.

Binding sites bound by this Transcription Factor

Binding siteNameDescriptionCounts
Motif_574MYB2 binding site motifMYB transcription factors in plants104 genes in 10 species
Motif_590MYB3 binding site motifExpression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses559 genes in 10 species

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DatabaseType
PlnTFDBMYB
PlantTFDBMYB