PLAZA 3.0 Dicots gene overview : AT5G27420

Gene: AT5G27420 (Arabidopsis thaliana)

Overview

Gene Identifier: AT5G27420
Transcript Identifier: AT5G27420.1
Gene Type: Coding gene
Location: 5 : 9684119-9685225 : positive

Family

Gene family: HOM03D000017
(2380 genes in 31 species)
specific family
Subfamily: ORTHO03D074803
(2 genes in 2 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: carbon/nitrogen insensitive 1

Curated Summary: Encodes CNI1 (Carbon/Nitrogen Insensitive1) (also named as ATL31), a RING type ubiquitin ligase that functions in the Carbon/Nitrogen response for growth phase transition in Arabidopsis seedlings.

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Identifiers

Identifier	Name
alias	carbon/nitrogen insensitive 1
alias	Arabidopsis toxicos en levadura 31
alias	CNI1
alias	ATL31
uniprot	Q8LGA5

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0009737	IEP, RCA,	UniProt	response to abscisic acid	1 2 3 4 5 6 7
GO:0010200	IEP, RCA,	UniProt	response to chitin	1 2 3 4 5 6 7
GO:0043562	IMP	UniProt	cellular response to nitrogen levels	1 2 3 4 5 6
GO:0009814	IEP	Gene Ontology	defense response, incompatible interaction	1
GO:0009816	IMP	UniProt	defense response to bacterium, incompatible interaction	1 2 3 4 5 6
GO:0002679	RCA	Gene Ontology	respiratory burst involved in defense response	1
GO:0007165	RCA	Gene Ontology	signal transduction	1
GO:0009414	RCA	Gene Ontology	response to water deprivation	1
GO:0009611	RCA	Gene Ontology	response to wounding	1
GO:0009693	RCA	Gene Ontology	ethylene biosynthetic process	1
GO:0009723	RCA	Gene Ontology	response to ethylene	1
GO:0009733	RCA	Gene Ontology	response to auxin	1
GO:0009738	RCA	Gene Ontology	abscisic acid-activated signaling pathway	1
GO:0009753	RCA	Gene Ontology	response to jasmonic acid	1
GO:0030968	RCA	Gene Ontology	endoplasmic reticulum unfolded protein response	1
GO:0035556	RCA	Gene Ontology	intracellular signal transduction	1
GO:0042538	RCA	Gene Ontology	hyperosmotic salinity response	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0008270	IEA, ISS	UniProt	zinc ion binding	1 2 3 4 5 6
GO:0004842	IDA	UniProt	ubiquitin-protein ligase activity	1 2 3 4 5 6
GO:0005515	IEA	InterPro	protein binding
GO:0043169	IEA	PLAZA Homology	cation binding	HOM03D000017
GO:0005488	IEA	PLAZA Homology	binding	HOM03D000017
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03D000017
GO:0046914	IEA	PLAZA Homology	transition metal ion binding	HOM03D000017
GO:0046872	IEA	PLAZA Homology	metal ion binding	HOM03D000017

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005576	ISM	Gene Ontology	extracellular region	1
GO:0016020	IDA	UniProt	membrane	1 2 3 4 5 6
GO:0016021	IEA	UniProt	integral to membrane	1 2 3 4 5

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR001841	Zinc finger, RING-type

Mapman id	Description
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING

SignalP	Description
SignalP-TM	Signal Peptide detected using TM network