Gene: AT5G24470 (Arabidopsis thaliana)

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Gene Identifier
AT5G24470
Transcript Identifier
AT5G24470.1
Gene Type
Coding gene
Location
5 : 8356204-8358873 : negative

Family

Gene family
HOM03D000847
(168 genes in 31 species)
specific family

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Descriptions

Description
pseudo-response regulator 5
Curated Summary
Encodes a pseudo-response regulator whose mutation affects various circadian-associated biological events such as flowering time in the long-day photoperiod conditions, red light sensitivity of seedlings during early photomorphogenesis, and the period of free-running rhythms of certain clock-controlled genes including CCA1 and APRR1/TOC1 in constant white light. Acts as transcriptional repressor of CCA1 and LHY.
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Identifiers

Identifier Name
aliaspseudo-response regulator 5
aliasAPRR5
aliasPRR5
uniprotQ6LA42

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0007623IMP, RCA, TASGene Ontologycircadian rhythm1 2 3
GO:0006355IEA, TASUniProtregulation of transcription, DNA-dependent1 2 3 4 5 6 7 8 9 10 11
GO:0009640IMPGene Ontologyphotomorphogenesis1
GO:0010114IEPGene Ontologyresponse to red light1
GO:0010218IEPGene Ontologyresponse to far red light1
GO:0045892IDAGene Ontologynegative regulation of transcription, DNA-dependent1
GO:0051170IDAGene Ontologynuclear import1
GO:0005982RCAGene Ontologystarch metabolic process1
GO:0009639RCAGene Ontologyresponse to red or far red light1
GO:0042752RCAGene Ontologyregulation of circadian rhythm1
GO:0048574RCAGene Ontologylong-day photoperiodism, flowering1
GO:0000160IEAInterProphosphorelay signal transduction system
GO:0035556IEAUniProtintracellular signal transduction1 2 3 4 5 6 7 8 9 10
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5 6 7 8 9 10
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03D000847

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000156IEA, ISSUniProtphosphorelay response regulator activity1 2 3 4 5 6 7 8 9 10 11
GO:0003677IPIGene OntologyDNA binding1
GO:0005515IEAInterProprotein binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEA, IDA, ISMUniProtnucleus1 2 3 4 5 6 7 8 9 10 11 12

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001789Signal transduction response regulator, receiver domain
IPR010402CCT domain
IPR011006CheY-like superfamily

Mapman id Description
27.3.66RNA.regulation of transcription.Psudo ARR transcription factor family
No SignalP domains detected for this gene.

Binding sites bound by this Transcription Factor

Binding siteNameDescriptionCounts
Matrix_77PRR5Not available6766 genes in 10 species
Matrix_83PRR5Not available636 genes in 10 species
Matrix_356PRR5Not available6619 genes in 10 species
Matrix_466PRR5Not available913 genes in 10 species

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DatabaseType
PlnTFDBPseudo ARR-B