Gene: AT5G23670 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G23670
Transcript Identifier
AT5G23670.1
Gene Type
Coding gene
Location
5 : 7981889-7985037 : positive

Family

Gene family
HOM03D002277
(77 genes in 30 species)
specific family
Subfamily
ORTHO03D001252
(54 genes in 30 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
long chain base2
Curated Summary
Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.
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Identifiers

Identifier Name
aliaslong chain base2
aliasLCB2
uniprotQ9LSZ9

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0030148ISSGene Ontologysphingolipid biosynthetic process1
GO:0046512IDAUniProtsphingosine biosynthetic process1 2 3 4 5 6 7 8 9
GO:0009555IMPUniProtpollen development1 2 3 4 5 6 7 8 9
GO:0009640IMPUniProtphotomorphogenesis1 2 3 4 5 6 7 8 9
GO:0043067IMPUniProtregulation of programmed cell death1 2 3 4 5 6 7 8 9
GO:0009693RCAGene Ontologyethylene biosynthetic process1
GO:0009058IEAInterProbiosynthetic process
GO:0008152IEAInterPrometabolic process
GO:0006915IEAUniProtapoptotic process1 2 3 4 5 6 7 8

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004758IDA, IGIISS, UniProtserine C-palmitoyltransferase activity1 2 3 4 5 6 7 8 9 10 11
GO:0005515IPIGene Ontologyprotein binding1
GO:0030170IEAUniProtpyridoxal phosphate binding1 2 3 4 5 6 7 8
GO:0003824IEAInterProcatalytic activity
GO:0016740IEAInterProtransferase activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009507ISMGene Ontologychloroplast1
GO:0005783IDAUniProtendoplasmic reticulum1 2 3 4 5 6 7 8 9
GO:0016020IDAUniProtmembrane1 2 3 4 5 6 7 8 9
GO:0005773IDAUniProtvacuole1 2 3 4 5 6 7 8 9
GO:0005789IEAUniProtendoplasmic reticulum membrane1 2 3 4 5 6 7 8
GO:0016021IEAUniProtintegral to membrane1 2 3 4 5 6 7 8

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR015424Pyridoxal phosphate-dependent transferase
IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1
IPR004839Aminotransferase, class I/classII
IPR015422Pyridoxal phosphate-dependent transferase, major region, subdomain 2
IPR001917Aminotransferase, class-II, pyridoxal-phosphate binding site

Mapman id Description
11.8.1.2lipid metabolism.exotics (steroids, squalene etc).sphingolipids.serine C-palmitoyltransferase
No SignalP domains detected for this gene.