Gene: AT5G18620 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G18620
Transcript Identifier
AT5G18620.2
Gene Type
Coding gene
Location
5 : 6196190-6202058 : negative

Family

Gene family
HOM03D000113
(850 genes in 31 species)
specific family
Subfamily
ORTHO03D003128
(39 genes in 25 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
chromatin remodeling factor17
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Identifiers

Identifier Name
aliaschromatin remodeling factor17
aliasCHR17

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000226RCAGene Ontologymicrotubule cytoskeleton organization1
GO:0000911RCAGene Ontologycytokinesis by cell plate formation1
GO:0006259RCAGene OntologyDNA metabolic process1
GO:0006261RCAGene OntologyDNA-dependent DNA replication1
GO:0006306RCAGene OntologyDNA methylation1
GO:0006342RCAGene Ontologychromatin silencing1
GO:0006346RCAGene Ontologymethylation-dependent chromatin silencing1
GO:0007126RCAGene Ontologymeiosis1
GO:0008283RCAGene Ontologycell proliferation1
GO:0010413RCAGene Ontologyglucuronoxylan metabolic process1
GO:0016246RCAGene OntologyRNA interference1
GO:0016572RCAGene Ontologyhistone phosphorylation1
GO:0031047RCAGene Ontologygene silencing by RNA1
GO:0033044RCAGene Ontologyregulation of chromosome organization1
GO:0045492RCAGene Ontologyxylan biosynthetic process1
GO:0051567RCAGene Ontologyhistone H3-K9 methylation1
GO:0010228IGIGene Ontologyvegetative to reproductive phase transition of meristem1
GO:0043044IEAInterProATP-dependent chromatin remodeling
GO:0006338IEAInterProchromatin remodeling
GO:0016049ISOPLAZA Tree-based Orthologycell growthAT3G06400
GO:0009553ISOPLAZA Tree-based Orthologyembryo sac developmentAT3G06400

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008094ISSGene OntologyDNA-dependent ATPase activity1
GO:0005515IPIGene Ontologyprotein binding1
GO:0003682IEAInterProchromatin binding
GO:0004386IEAInterProhelicase activity
GO:0031491IEAInterPronucleosome binding
GO:0016818IEAInterProhydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0003676IEAInterPronucleic acid binding
GO:0005524IEAInterProATP binding
GO:0003677IEAInterProDNA binding
GO:0032555IEAPLAZA Homologypurine ribonucleotide bindingHOM03D000113
GO:0016817IEAPLAZA Homologyhydrolase activity, acting on acid anhydridesHOM03D000113
GO:0032553IEAPLAZA Homologyribonucleotide bindingHOM03D000113
GO:0043168IEAPLAZA Homologyanion bindingHOM03D000113
GO:0043167IEAPLAZA Homologyion bindingHOM03D000113
GO:0035639IEAPLAZA Homologypurine ribonucleoside triphosphate bindingHOM03D000113
GO:0097367IEAPLAZA Homologycarbohydrate derivative bindingHOM03D000113
GO:0032559IEAPLAZA Homologyadenyl ribonucleotide bindingHOM03D000113
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03D000113
GO:0016462IEAPLAZA Homologypyrophosphatase activityHOM03D000113
GO:0000166IEAPLAZA Homologynucleotide bindingHOM03D000113
GO:0030554IEAPLAZA Homologyadenyl nucleotide bindingHOM03D000113
GO:0001882IEAPLAZA Homologynucleoside bindingHOM03D000113
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03D000113
GO:0017076IEAPLAZA Homologypurine nucleotide bindingHOM03D000113
GO:0017111IEAPLAZA Homologynucleoside-triphosphatase activityHOM03D000113
GO:0036094IEAPLAZA Homologysmall molecule bindingHOM03D000113
GO:0032549IEAPLAZA Homologyribonucleoside bindingHOM03D000113
GO:0016787IEAPLAZA Homologyhydrolase activityHOM03D000113
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03D000113
GO:0001883IEAPLAZA Homologypurine nucleoside bindingHOM03D000113
GO:0032550IEAPLAZA Homologypurine ribonucleoside bindingHOM03D000113

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISM, IEAGene Ontologynucleus1
GO:0005829RCAGene Ontologycytosol1

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR014001Helicase, superfamily 1/2, ATP-binding domain
IPR001650Helicase, C-terminal
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR015194ISWI HAND domain
IPR001005SANT/Myb domain
IPR000330SNF2-related
IPR009057Homeodomain-like
IPR017884SANT domain
IPR015195SLIDE domain

Mapman id Description
28.1DNA.synthesis/chromatin structure
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBSNF2