Gene: AT5G16260 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G16260
Transcript Identifier
AT5G16260.1
Gene Type
Coding gene
Location
5 : 5311363-5315496 : positive

Family

Gene family
HOM03D000846
(168 genes in 31 species)
specific family
Subfamily
ORTHO03D006539
(32 genes in 29 species)
specific family

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Descriptions

Description
RNA binding (RRM/RBD/RNP motifs) family protein
Curated Summary
Encodes a RNA binding protein ELF9 (EARLY FLOWERING9). Loss of ELF9 function in the Wassilewskija ecotype causes early flowering in short days. ELF9 reduces SOC1 (SUPPRESSOR OF OVEREXPRESSION OF CO1) transcript levels, possibly via nonsense-mediated mRNA decay.
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Identifiers

Identifier Name
aliasELF9
aliasEARLY FLOWERING 9

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0000184IMPGene Ontologynuclear-transcribed mRNA catabolic process, nonsense-mediated decay1
GO:0009910IMPGene Ontologynegative regulation of flower development1
GO:0000956RCAGene Ontologynuclear-transcribed mRNA catabolic process1
GO:0006346RCAGene Ontologymethylation-dependent chromatin silencing1
GO:0016246RCAGene OntologyRNA interference1
GO:0006468IEAPLAZA Homologyprotein phosphorylationHOM03D000846

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003723ISSGene OntologyRNA binding1
GO:0003729IDAGene OntologymRNA binding1
GO:0005515IEAInterProprotein binding
GO:0000166IEAInterPronucleotide binding
GO:0003676IEAInterPronucleic acid binding
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03D000846
GO:0005524IEAPLAZA HomologyATP bindingHOM03D000846
GO:0004672IEAPLAZA Homologyprotein kinase activityHOM03D000846

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISMGene Ontologynucleus1 2
GO:0005829IDAGene Ontologycytosol1

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR025640Domain of unknown function DUF4339
IPR000504RNA recognition motif domain
IPR012677Nucleotide-binding, alpha-beta plait
IPR003169GYF

Mapman id Description
27.4RNA.RNA binding
No SignalP domains detected for this gene.