Gene: AT5G13930 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G13930
Transcript Identifier
AT5G13930.1
Gene Type
Coding gene
Location
5 : 4488762-4490035 : positive

Family

Gene family
HOM03D000336
(352 genes in 29 species)
specific family
Subfamily
ORTHO03D000106
(174 genes in 29 species)
specific family

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Descriptions

Description
Chalcone and stilbene synthase family protein
Curated Summary
Encodes chalcone synthase (CHS), a key enzyme involved in the biosynthesis of flavonoids. Required for the accumulation of purple anthocyanins in leaves and stems. Also involved in the regulation of auxin transport and the modulation of root gravitropism.
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Identifiers

Identifier Name
aliasCHALCONE SYNTHASE
aliasTT4
aliasCHS
aliasATCHS
aliasTRANSPARENT TESTA 4
uniprotP13114

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009926IMPUniProtauxin polar transport1 2 3 4 5 6 7
GO:0010224IMP, RCA, UniProtresponse to UV-B1 2 3 4 5 6 7 8
GO:0031540IEPUniProtregulation of anthocyanin biosynthetic process1 2 3 4 5 6 7
GO:0009611IEPUniProtresponse to wounding1 2 3 4 5 6 7
GO:0009753IEPUniProtresponse to jasmonic acid1 2 3 4 5 6 7
GO:0009629IMPUniProtresponse to gravity1 2 3 4 5 6 7
GO:0009733IEPUniProtresponse to auxin1 2 3 4 5 6 7
GO:0009813IMP, ISSRCA, UniProtflavonoid biosynthetic process1 2 3 4 5 6 7 8 9
GO:0009411RCAGene Ontologyresponse to UV1
GO:0009718RCAGene Ontologyanthocyanin-containing compound biosynthetic process1
GO:0009744RCAGene Ontologyresponse to sucrose1
GO:0009715IMPGene Ontologychalcone biosynthetic process1
GO:0006979IEPUniProtresponse to oxidative stress1 2 3 4 5 6 7
GO:0009058IEAInterProbiosynthetic process
GO:0008152IEAInterPrometabolic process

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IPIGene Ontologyprotein binding1
GO:0016210IEA, IMPUniProtnaringenin-chalcone synthase activity1 2 3 4 5 6 7
GO:0016746IEAInterProtransferase activity, transferring acyl groups
GO:0003824IEAInterProcatalytic activity
GO:0016740IEAPLAZA Homologytransferase activityHOM03D000336

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737ISMGene Ontologycytoplasm1
GO:0005783IDAUniProtendoplasmic reticulum1 2 3 4 5 6 7
GO:0009705IDAUniProtplant-type vacuole membrane1 2 3 4 5 6 7
GO:0005634IDAUniProtnucleus1 2 3 4 5 6 7

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR012328Chalcone/stilbene synthase, C-terminal
IPR016039Thiolase-like
IPR016038Thiolase-like, subgroup
IPR001099Chalcone/stilbene synthase, N-terminal
IPR018088Chalcone/stilbene synthase, active site

Mapman id Description
16.8.2.1secondary metabolism.flavonoids.chalcones.naringenin-chalcone synthase
No SignalP domains detected for this gene.