Gene: AT5G12330 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT5G12330
Transcript Identifier
AT5G12330.4
Gene Type
Coding gene
Location
5 : 3987677-3989408 : negative

Family

Gene family
HOM03D000582
(230 genes in 29 species)
specific family
Subfamily
ORTHO03D002649
(40 genes in 29 species)
specific family

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Descriptions

Description
Lateral root primordium (LRP) protein-related
Curated Summary
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. Expressed in lateral root primordia and induced by auxin. SWP1 is involved in the repression of LRP1 via histone deacetylation.
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Identifiers

Identifier Name
aliasLATERAL ROOT PRIMORDIUM 1
aliasLRP1
uniprotQ94CK9

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009733IEPGene Ontologyresponse to auxin1
GO:0048364IMPGene Ontologyroot development1
GO:0007155RCAGene Ontologycell adhesion1
GO:0010090RCAGene Ontologytrichome morphogenesis1
GO:0045010RCAGene Ontologyactin nucleation1
GO:0048765RCAGene Ontologyroot hair cell differentiation1
GO:0071555RCAGene Ontologycell wall organization1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0042803IDA, IPIUniProtprotein homodimerization activity1 2 3 4 5 6

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISSUniProtnucleus1 2 3 4 5

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR007818Protein of unknown function DUF702
IPR006511Lateral Root Primordium type 1, C-terminal
IPR006510Zinc finger, lateral root primordium type 1

Mapman id Description
33.99development.unspecified
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBSRS
PlantTFDBSRS