Gene: AT5G04240 (Arabidopsis thaliana)

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Gene Identifier
AT5G04240
Transcript Identifier
AT5G04240.1
Gene Type
Coding gene
Location
5 : 1169544-1174638 : positive

Family

Gene family
HOM03D000357
(342 genes in 31 species)
specific family
Subfamily
ORTHO03D007381
(31 genes in 25 species)
specific family

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Descriptions

Description
Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein
Curated Summary
Early Flowering 6 (ELF6) encodes a Jumonji N/C and zinc finger domain-containing protein that acts as a repressor in the photoperiod pathway. ELF6 interacts with BES1 in a Y2H assay, in vitro, and in Arabidosis protoplasts (based on BiFC). ELF6 may play a role in brassinosteroid signaling by affecting histone methylation in the promoters of BR-responsive genes.
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Identifiers

Identifier Name
aliasELF6
aliasEARLY FLOWERING 6
uniprotQ6BDA0

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355RCA, TASGene Ontologyregulation of transcription, DNA-dependent1 2
GO:0048577IMPUniProtnegative regulation of short-day photoperiodism, flowering1 2 3 4 5 6 7
GO:0048579IMPUniProtnegative regulation of long-day photoperiodism, flowering1 2 3 4 5 6 7
GO:0009741IMPUniProtresponse to brassinosteroid1 2 3 4 5 6 7
GO:0009826IMPUniProtunidimensional cell growth1 2 3 4 5 6 7
GO:0033169IMPUniProthistone H3-K9 demethylation1 2 3 4 5 6 7
GO:0009630RCAGene Ontologygravitropism1
GO:0019344RCAGene Ontologycysteine biosynthetic process1
GO:0043687RCAGene Ontologypost-translational protein modification1
GO:0045893RCAGene Ontologypositive regulation of transcription, DNA-dependent1
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5 6

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700ISSUniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5 6 7
GO:0005515IPI, IEAGene Ontologyprotein binding1
GO:0003676IEAUniProtnucleic acid binding1 2 3 4 5 6
GO:0046872IEAUniProtmetal ion binding1 2 3 4 5 6
GO:0051213IEAUniProtdioxygenase activity1 2 3 4 5 6

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISM, UniProtnucleus1 2 3 4 5 6 7 8

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR007087Zinc finger, C2H2
IPR003347JmjC domain
IPR003349Transcription factor jumonji, JmjN
IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
IPR015880Zinc finger, C2H2-like

Mapman id Description
27.3.57RNA.regulation of transcription.JUMONJI family
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBC2H2
PlantTFDBC2H2