Gene: AT5G02030 (Arabidopsis thaliana)

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Gene Identifier
AT5G02030
Transcript Identifier
AT5G02030.1
Gene Type
Coding gene
Location
5 : 395754-398872 : positive

Family

Gene family
HOM03D000268
(419 genes in 31 species)
specific family
Subfamily
ORTHO03D003032
(39 genes in 26 species)
specific family

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Descriptions

Description
POX (plant homeobox) family protein
Curated Summary
Mutant has additional lateral organs and phyllotaxy defect. Encodes a homeodomain transcription factor. Has sequence similarity to the Arabidopsis ovule development regulator Bell1. Binds directly to the AGAMOUS cis-regulatory element. Its localization to the nucleus is dependent on the coexpression of either STM or BP.
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Identifiers

Identifier Name
aliasVAN
aliasPNY
aliasBLH9
aliasREPLUMLESS
aliasLARSON
aliasPENNYWISE
aliasBLR
aliasBEL1-LIKE HOMEODOMAIN 9
aliasHB-6
aliasBELLRINGER
aliasVAAMANA
aliasRPL
aliasLSN
uniprotQ9LZM8

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0007389IMP, RCAGene Ontologypattern specification process1 2
GO:0010051IMP, RCA, UniProtxylem and phloem pattern formation1 2 3 4 5 6 7 8 9 10 11 12
GO:0080006IMPUniProtinternode patterning1 2 3 4 5 6 7 8 9 10 11
GO:0010076IGIUniProtmaintenance of floral meristem identity1 2 3 4 5 6 7 8 9 10 11
GO:0010228IGIUniProtvegetative to reproductive phase transition of meristem1 2 3 4 5 6 7 8 9 10 11
GO:0048645IGIUniProtorgan formation1 2 3 4 5 6 7 8 9 10 11
GO:0045892IMPUniProtnegative regulation of transcription, DNA-dependent1 2 3 4 5 6 7 8 9 10 11
GO:0048457IMPUniProtfloral whorl morphogenesis1 2 3 4 5 6 7 8 9 10 11
GO:0010154IMPUniProtfruit development1 2 3 4 5 6 7 8 9 10 11
GO:0048367IGIGene Ontologyshoot system development1
GO:0010077IGIUniProtmaintenance of inflorescence meristem identity1 2 3 4 5 6 7 8 9 10 11
GO:0010223IGIUniProtsecondary shoot formation1 2 3 4 5 6 7 8 9 10 11
GO:0006306RCAGene OntologyDNA methylation1
GO:0006342RCAGene Ontologychromatin silencing1
GO:0006346RCAGene Ontologymethylation-dependent chromatin silencing1
GO:0007267RCAGene Ontologycell-cell signaling1
GO:0009616RCAGene Ontologyvirus induced gene silencing1
GO:0009855RCAGene Ontologydetermination of bilateral symmetry1
GO:0009886RCAGene Ontologypost-embryonic morphogenesis1
GO:0009887RCAGene Ontologyorgan morphogenesis1
GO:0009909RCAGene Ontologyregulation of flower development1
GO:0009944RCAGene Ontologypolarity specification of adaxial/abaxial axis1
GO:0010014RCAGene Ontologymeristem initiation1
GO:0010267RCAGene Ontologyproduction of ta-siRNAs involved in RNA interference1
GO:0016246RCAGene OntologyRNA interference1
GO:0035196RCAGene Ontologyproduction of miRNAs involved in gene silencing by miRNA1
GO:0048438RCAGene Ontologyfloral whorl development1
GO:0048439RCAGene Ontologyflower morphogenesis1
GO:0048481RCAGene Ontologyovule development1
GO:0048507RCAGene Ontologymeristem development1
GO:0048513RCAGene Ontologyorgan development1
GO:0048519RCAGene Ontologynegative regulation of biological process1
GO:0006355IEAInterProregulation of transcription, DNA-dependent
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5 6 7 8 9 10
GO:0010468IEAPLAZA Homologyregulation of gene expressionHOM03D000268
GO:0010467IEAPLAZA Homologygene expressionHOM03D000268
GO:0006807IEAPLAZA Homologynitrogen compound metabolic processHOM03D000268
GO:0051252IEAPLAZA Homologyregulation of RNA metabolic processHOM03D000268
GO:0051171IEAPLAZA Homologyregulation of nitrogen compound metabolic processHOM03D000268
GO:0019222IEAPLAZA Homologyregulation of metabolic processHOM03D000268
GO:0019219IEAPLAZA Homologyregulation of nucleobase-containing compound metabolic processHOM03D000268
GO:0034641IEAPLAZA Homologycellular nitrogen compound metabolic processHOM03D000268
GO:0034645IEAPLAZA Homologycellular macromolecule biosynthetic processHOM03D000268
GO:0050789IEAPLAZA Homologyregulation of biological processHOM03D000268
GO:0009889IEAPLAZA Homologyregulation of biosynthetic processHOM03D000268
GO:0018130IEAPLAZA Homologyheterocycle biosynthetic processHOM03D000268
GO:0019438IEAPLAZA Homologyaromatic compound biosynthetic processHOM03D000268
GO:0046483IEAPLAZA Homologyheterocycle metabolic processHOM03D000268
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03D000268
GO:0044271IEAPLAZA Homologycellular nitrogen compound biosynthetic processHOM03D000268
GO:0065007IEAPLAZA Homologybiological regulationHOM03D000268
GO:0010556IEAPLAZA Homologyregulation of macromolecule biosynthetic processHOM03D000268
GO:0006139IEAPLAZA Homologynucleobase-containing compound metabolic processHOM03D000268
GO:0032774IEAPLAZA HomologyRNA biosynthetic processHOM03D000268
GO:0006725IEAPLAZA Homologycellular aromatic compound metabolic processHOM03D000268
GO:1901576IEAPLAZA Homologyorganic substance biosynthetic processHOM03D000268
GO:0090304IEAPLAZA Homologynucleic acid metabolic processHOM03D000268
GO:0080090IEAPLAZA Homologyregulation of primary metabolic processHOM03D000268
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03D000268
GO:0009058IEAPLAZA Homologybiosynthetic processHOM03D000268
GO:0009059IEAPLAZA Homologymacromolecule biosynthetic processHOM03D000268
GO:2000112IEAPLAZA Homologyregulation of cellular macromolecule biosynthetic processHOM03D000268
GO:0060255IEAPLAZA Homologyregulation of macromolecule metabolic processHOM03D000268
GO:0031323IEAPLAZA Homologyregulation of cellular metabolic processHOM03D000268
GO:0031326IEAPLAZA Homologyregulation of cellular biosynthetic processHOM03D000268
GO:1901360IEAPLAZA Homologyorganic cyclic compound metabolic processHOM03D000268
GO:1901362IEAPLAZA Homologyorganic cyclic compound biosynthetic processHOM03D000268
GO:0034654IEAPLAZA Homologynucleobase-containing compound biosynthetic processHOM03D000268
GO:0050794IEAPLAZA Homologyregulation of cellular processHOM03D000268
GO:0044249IEAPLAZA Homologycellular biosynthetic processHOM03D000268

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677ISS, IEAGene OntologyDNA binding1
GO:0003700ISS, IEA, UniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5 6 7 8 9 10 11
GO:0005515IPIGene Ontologyprotein binding1
GO:0043565IDA, IEA, UniProtsequence-specific DNA binding1 2 3 4 5 6 7 8 9 10 11
GO:0003676IEAPLAZA Homologynucleic acid bindingHOM03D000268
GO:0001071IEAPLAZA Homologynucleic acid binding transcription factor activityHOM03D000268

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISM, UniProtnucleus1 2 3 4 5 6 7 8 9 10 11 12
GO:0005829IDAUniProtcytosol1 2 3 4 5 6 7 8 9 10 11

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
Show redundant parents:  
 
InterPro Description
IPR006563POX domain
IPR008422Homeobox KN domain
IPR001356Homeobox domain
IPR009057Homeodomain-like

Mapman id Description
27.3.22RNA.regulation of transcription.HB,Homeobox transcription factor family
No SignalP domains detected for this gene.

Binding sites bound by this Transcription Factor

Binding siteNameDescriptionCounts
Motif_297Bellringer/replumless/pennywise BS1 IN AGRepression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems3876 genes in 10 species
Motif_533Bellringer/replumless/pennywise BS3 IN AGRepression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems987 genes in 10 species
Motif_673Bellringer/replumless/pennywise BS2 IN AGRepression of AGAMOUS by BELLRINGER in Floral and Inflorescence Meristems987 genes in 10 species

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DatabaseType
PlnTFDBHB
PlantTFDBTALE