Gene: AT4G40060 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT4G40060
Transcript Identifier
AT4G40060.1
Gene Type
Coding gene
Location
4 : 18571682-18572774 : negative

Family

Gene family
HOM03D000110
(883 genes in 29 species)
specific family
Subfamily
ORTHO03D005278
(34 genes in 26 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
homeobox protein 16
Curated Summary
Encodes a homeodomain leucine zipper class I (HD-Zip I) protein.
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Identifiers

Identifier Name
aliasATHB16
aliashomeobox protein 16
aliasHB16
aliasATHB-16
uniprotQ940J1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355ISS, IEAGene Ontologyregulation of transcription, DNA-dependent1
GO:0009637IMPUniProtresponse to blue light1 2 3 4 5
GO:0030308IMPUniProtnegative regulation of cell growth1 2 3 4 5
GO:0048510IMPUniProtregulation of timing of transition from vegetative to reproductive phase1 2 3 4 5
GO:0048573IMP, RCA, UniProtphotoperiodism, flowering1 2 3 4 5 6
GO:0045893IDAUniProtpositive regulation of transcription, DNA-dependent1 2 3 4 5
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4
GO:0010468IEAPLAZA Homologyregulation of gene expressionHOM03D000110
GO:0010467IEAPLAZA Homologygene expressionHOM03D000110
GO:0006807IEAPLAZA Homologynitrogen compound metabolic processHOM03D000110
GO:0051252IEAPLAZA Homologyregulation of RNA metabolic processHOM03D000110
GO:0051171IEAPLAZA Homologyregulation of nitrogen compound metabolic processHOM03D000110
GO:0044260IEAPLAZA Homologycellular macromolecule metabolic processHOM03D000110
GO:0019222IEAPLAZA Homologyregulation of metabolic processHOM03D000110
GO:0019219IEAPLAZA Homologyregulation of nucleobase-containing compound metabolic processHOM03D000110
GO:0034641IEAPLAZA Homologycellular nitrogen compound metabolic processHOM03D000110
GO:0034645IEAPLAZA Homologycellular macromolecule biosynthetic processHOM03D000110
GO:0050789IEAPLAZA Homologyregulation of biological processHOM03D000110
GO:0009889IEAPLAZA Homologyregulation of biosynthetic processHOM03D000110
GO:0018130IEAPLAZA Homologyheterocycle biosynthetic processHOM03D000110
GO:0043170IEAPLAZA Homologymacromolecule metabolic processHOM03D000110
GO:0019438IEAPLAZA Homologyaromatic compound biosynthetic processHOM03D000110
GO:0046483IEAPLAZA Homologyheterocycle metabolic processHOM03D000110
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03D000110
GO:0009987IEAPLAZA Homologycellular processHOM03D000110
GO:0044271IEAPLAZA Homologycellular nitrogen compound biosynthetic processHOM03D000110
GO:0065007IEAPLAZA Homologybiological regulationHOM03D000110
GO:0010556IEAPLAZA Homologyregulation of macromolecule biosynthetic processHOM03D000110
GO:0006139IEAPLAZA Homologynucleobase-containing compound metabolic processHOM03D000110
GO:0032774IEAPLAZA HomologyRNA biosynthetic processHOM03D000110
GO:0006725IEAPLAZA Homologycellular aromatic compound metabolic processHOM03D000110
GO:1901576IEAPLAZA Homologyorganic substance biosynthetic processHOM03D000110
GO:0090304IEAPLAZA Homologynucleic acid metabolic processHOM03D000110
GO:0080090IEAPLAZA Homologyregulation of primary metabolic processHOM03D000110
GO:2001141IEAPLAZA Homologyregulation of RNA biosynthetic processHOM03D000110
GO:0044237IEAPLAZA Homologycellular metabolic processHOM03D000110
GO:0044238IEAPLAZA Homologyprimary metabolic processHOM03D000110
GO:0009058IEAPLAZA Homologybiosynthetic processHOM03D000110
GO:0009059IEAPLAZA Homologymacromolecule biosynthetic processHOM03D000110
GO:0060255IEAPLAZA Homologyregulation of macromolecule metabolic processHOM03D000110
GO:2000112IEAPLAZA Homologyregulation of cellular macromolecule biosynthetic processHOM03D000110
GO:0031323IEAPLAZA Homologyregulation of cellular metabolic processHOM03D000110
GO:0031326IEAPLAZA Homologyregulation of cellular biosynthetic processHOM03D000110
GO:1901360IEAPLAZA Homologyorganic cyclic compound metabolic processHOM03D000110
GO:1901362IEAPLAZA Homologyorganic cyclic compound biosynthetic processHOM03D000110
GO:0034654IEAPLAZA Homologynucleobase-containing compound biosynthetic processHOM03D000110
GO:0050794IEAPLAZA Homologyregulation of cellular processHOM03D000110
GO:0008152IEAPLAZA Homologymetabolic processHOM03D000110
GO:0071704IEAPLAZA Homologyorganic substance metabolic processHOM03D000110
GO:0044249IEAPLAZA Homologycellular biosynthetic processHOM03D000110

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700ISS, NASIEA, UniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5 6
GO:0043565IDA, IEA, UniProtsequence-specific DNA binding1 2 3 4 5
GO:0000976IEAUniProttranscription regulatory region sequence-specific DNA binding1 2 3 4
GO:0003677IEAInterProDNA binding
GO:0044212IEAPLAZA Homologytranscription regulatory region DNA bindingHOM03D000110
GO:0001067IEAPLAZA Homologyregulatory region nucleic acid bindingHOM03D000110
GO:0000975IEAPLAZA Homologyregulatory region DNA bindingHOM03D000110
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03D000110
GO:0003676IEAPLAZA Homologynucleic acid bindingHOM03D000110
GO:0005488IEAPLAZA HomologybindingHOM03D000110
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03D000110
GO:0001071IEAPLAZA Homologynucleic acid binding transcription factor activityHOM03D000110

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEA, ISM, ISSUniProtnucleus1 2 3 4 5 6
GO:0043231IEAPLAZA Homologyintracellular membrane-bounded organelleHOM03D000110
GO:0005622IEAPLAZA HomologyintracellularHOM03D000110
GO:0043226IEAPLAZA HomologyorganelleHOM03D000110
GO:0043227IEAPLAZA Homologymembrane-bounded organelleHOM03D000110
GO:0043229IEAPLAZA Homologyintracellular organelleHOM03D000110
GO:0044464IEAPLAZA Homologycell partHOM03D000110
GO:0044424IEAPLAZA Homologyintracellular partHOM03D000110
GO:0005623IEAPLAZA HomologycellHOM03D000110

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000047Helix-turn-helix motif
IPR001356Homeobox domain
IPR003106Leucine zipper, homeobox-associated
IPR009057Homeodomain-like
IPR017970Homeobox, conserved site

Mapman id Description
27.3.22RNA.regulation of transcription.HB,Homeobox transcription factor family
No SignalP domains detected for this gene.

Binding sites bound by this Transcription Factor

Binding siteNameDescriptionCounts
Matrix_318ATHB16Not available0 genes in 0 species

View full overview
DatabaseType
PlnTFDBHB
PlantTFDBHD-ZIP