Gene: AT4G39100 (Arabidopsis thaliana)

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Gene Identifier
AT4G39100
Transcript Identifier
AT4G39100.1
Gene Type
Coding gene
Location
4 : 18218298-18220134 : negative

Family

Gene family
HOM03D001356
(115 genes in 31 species)
specific family
Subfamily
ORTHO03D008753
(29 genes in 25 species)
specific family

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Descriptions

Description
PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein
Curated Summary
Putative transcription factor containing a PHD finger and BAH motif, required for normal development
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Identifiers

Identifier Name
aliasshort life
aliasSHL1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009791IMPGene Ontologypost-embryonic development1
GO:0009640IMPGene Ontologyphotomorphogenesis1
GO:0006096RCAGene Ontologyglycolysis1
GO:0006333RCAGene Ontologychromatin assembly or disassembly1
GO:0006635RCAGene Ontologyfatty acid beta-oxidation1
GO:0006833RCAGene Ontologywater transport1
GO:0006972RCAGene Ontologyhyperosmotic response1
GO:0007030RCAGene OntologyGolgi organization1
GO:0009266RCAGene Ontologyresponse to temperature stimulus1
GO:0009651RCAGene Ontologyresponse to salt stress1
GO:0016558RCAGene Ontologyprotein import into peroxisome matrix1
GO:0042744RCAGene Ontologyhydrogen peroxide catabolic process1
GO:0046686RCAGene Ontologyresponse to cadmium ion1
GO:0048767RCAGene Ontologyroot hair elongation1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700ISSGene Ontologysequence-specific DNA binding transcription factor activity1
GO:0005515IEAInterProprotein binding
GO:0008270IEAInterProzinc ion binding
GO:0003677IEAInterProDNA binding

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISMGene Ontologynucleus1 2

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR013083Zinc finger, RING/FYVE/PHD-type
IPR001025Bromo adjacent homology (BAH) domain
IPR019787Zinc finger, PHD-finger
IPR019786Zinc finger, PHD-type, conserved site
IPR001965Zinc finger, PHD-type
IPR011011Zinc finger, FYVE/PHD-type

Mapman id Description
27.3.99RNA.regulation of transcription.unclassified
No SignalP domains detected for this gene.
DatabaseType
PlnTFDBPHD