PLAZA 3.0 Dicots gene overview : AT4G28890

Gene: AT4G28890 (Arabidopsis thaliana)

Overview

Gene Identifier: AT4G28890
Transcript Identifier: AT4G28890.1
Gene Type: Coding gene
Location: 4 : 14256437-14257735 : negative

Family

Gene family: HOM03D000017
(2380 genes in 31 species)
specific family
Subfamily: ORTHO03D003016
(39 genes in 25 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: RING/U-box superfamily protein

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Identifiers

Identifier	Name
uniprot	Q5XF85

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0016567	IDA	Gene Ontology	protein ubiquitination	1
GO:0000041	RCA	Gene Ontology	transition metal ion transport	1
GO:0048527	RCA	Gene Ontology	lateral root development	1
GO:0048589	RCA	Gene Ontology	developmental growth	1
GO:0048765	RCA	Gene Ontology	root hair cell differentiation	1
GO:0048767	RCA	Gene Ontology	root hair elongation	1

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0008270	IEA, ISS	UniProt	zinc ion binding	1 2 3 4 5 6
GO:0004842	IDA	UniProt	ubiquitin-protein ligase activity	1 2 3 4 5 6
GO:0005515	IEA	InterPro	protein binding
GO:0043169	IEA	PLAZA Homology	cation binding	HOM03D000017
GO:0005488	IEA	PLAZA Homology	binding	HOM03D000017
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03D000017
GO:0046914	IEA	PLAZA Homology	transition metal ion binding	HOM03D000017
GO:0046872	IEA	PLAZA Homology	metal ion binding	HOM03D000017

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0016021	IEA	UniProt	integral to membrane	1 2 3 4 5

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR001841	Zinc finger, RING-type

Mapman id	Description
29.5.11.4.2	protein.degradation.ubiquitin.E3.RING

SignalP	Description
SignalP-TM	Signal Peptide detected using TM network