PLAZA 3.0 Dicots gene overview : AT4G28620

Gene: AT4G28620 (Arabidopsis thaliana)

Overview

Gene Identifier: AT4G28620
Transcript Identifier: AT4G28620.1
Gene Type: Coding gene
Location: 4 : 14135526-14137953 : negative

Family

Gene family: HOM03D000078
(1155 genes in 31 species)
specific family
Subfamily: ORTHO03D010577
(25 genes in 13 species)
specific family
Duplication type: Tandem duplicate

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Descriptions

Description: ABC transporter of the mitochondrion 2

Curated Summary: Half-molecule ABC transporter ATM2. Arabidopsis thaliana has three ATM genes, namely ATM1, ATM2 and ATM3. Only ATM3 has an important function for plant growth.

Identifiers

Identifier	Name
alias	ATM2
alias	ATP-binding cassette B24
alias	ABC transporter of the mitochondrion 2
alias	ARABIDOPSIS THALIANA ABC TRANSPORTER OF THE MITOCHONDRION 2
alias	ATATM2
alias	ABCB24
uniprot	Q9M0G9

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0006200	IBA	Gene Ontology	ATP catabolic process	1
GO:0006879	ISS, IBA	UniProt	cellular iron ion homeostasis	1 2 3 4 5 6 7 8 9
GO:0055085	IBA, IEA	Gene Ontology	transmembrane transport	1
GO:0046686	NAS	UniProt	response to cadmium ion	1 2 3 4 5 6 7 8 9
GO:0006810	IEA	InterPro	transport
GO:0006811	IEA	UniProt	ion transport	1 2 3 4 5 6 7 8
GO:0044765	IEA	PLAZA Homology	single-organism transport	HOM03D000078
GO:0044763	IEA	PLAZA Homology	single-organism cellular process	HOM03D000078
GO:0051234	IEA	PLAZA Homology	establishment of localization	HOM03D000078
GO:0009987	IEA	PLAZA Homology	cellular process	HOM03D000078
GO:0044699	IEA	PLAZA Homology	single-organism process	HOM03D000078
GO:0051179	IEA	PLAZA Homology	localization	HOM03D000078

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005215	ISS	Gene Ontology	transporter activity	1
GO:0042626	IBA, ISSIEA,	UniProt	ATPase activity, coupled to transmembrane movement of substances	1 2 3 4 5 6 7 8 9 10
GO:0017111	IEA	InterPro	nucleoside-triphosphatase activity
GO:0000166	IEA	InterPro	nucleotide binding
GO:0016887	IEA	InterPro	ATPase activity
GO:0005524	IEA	UniProt	ATP binding	1 2 3 4 5 6 7 8
GO:0032555	IEA	PLAZA Homology	purine ribonucleotide binding	HOM03D000078
GO:0016817	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides	HOM03D000078
GO:0043168	IEA	PLAZA Homology	anion binding	HOM03D000078
GO:0032553	IEA	PLAZA Homology	ribonucleotide binding	HOM03D000078
GO:0042623	IEA	PLAZA Homology	ATPase activity, coupled	HOM03D000078
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03D000078
GO:0035639	IEA	PLAZA Homology	purine ribonucleoside triphosphate binding	HOM03D000078
GO:0097367	IEA	PLAZA Homology	carbohydrate derivative binding	HOM03D000078
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03D000078
GO:0022804	IEA	PLAZA Homology	active transmembrane transporter activity	HOM03D000078
GO:0016818	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	HOM03D000078
GO:0032559	IEA	PLAZA Homology	adenyl ribonucleotide binding	HOM03D000078
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03D000078
GO:0016462	IEA	PLAZA Homology	pyrophosphatase activity	HOM03D000078
GO:0001882	IEA	PLAZA Homology	nucleoside binding	HOM03D000078
GO:0030554	IEA	PLAZA Homology	adenyl nucleotide binding	HOM03D000078
GO:0016820	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances	HOM03D000078
GO:0017076	IEA	PLAZA Homology	purine nucleotide binding	HOM03D000078
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03D000078
GO:0015399	IEA	PLAZA Homology	primary active transmembrane transporter activity	HOM03D000078
GO:0015405	IEA	PLAZA Homology	P-P-bond-hydrolysis-driven transmembrane transporter activity	HOM03D000078
GO:0022857	IEA	PLAZA Homology	transmembrane transporter activity	HOM03D000078
GO:0036094	IEA	PLAZA Homology	small molecule binding	HOM03D000078
GO:0032549	IEA	PLAZA Homology	ribonucleoside binding	HOM03D000078
GO:0016787	IEA	PLAZA Homology	hydrolase activity	HOM03D000078
GO:0005488	IEA	PLAZA Homology	binding	HOM03D000078
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03D000078
GO:0001883	IEA	PLAZA Homology	purine nucleoside binding	HOM03D000078
GO:0032550	IEA	PLAZA Homology	purine ribonucleoside binding	HOM03D000078
GO:0043492	IEA	PLAZA Homology	ATPase activity, coupled to movement of substances	HOM03D000078

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005739	IDA, ISM	Gene Ontology	mitochondrion	1 2
GO:0005743	IBA	UniProt	mitochondrial inner membrane	1 2 3 4 5 6 7 8 9
GO:0016021	IBA, IEA,	UniProt	integral to membrane	1 2 3 4 5 6 7 8 9
GO:0031224	IEA	PLAZA Homology	intrinsic to membrane	HOM03D000078
GO:0016020	IEA	PLAZA Homology	membrane	HOM03D000078
GO:0044425	IEA	PLAZA Homology	membrane part	HOM03D000078

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR003593	AAA+ ATPase domain
IPR017871	ABC transporter, conserved site
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR003439	ABC transporter-like
IPR011527	ABC transporter type 1, transmembrane domain
IPR001140	ABC transporter, transmembrane domain

Mapman id	Description
34.16	transport.ABC transporters and multidrug resistance systems

No SignalP domains detected for this gene.