Gene: AT4G28610 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT4G28610
Transcript Identifier
AT4G28610.1
Gene Type
Coding gene
Location
4 : 14133164-14134951 : negative

Family

Gene family
HOM03D000096
(1015 genes in 31 species)
specific family
Subfamily
ORTHO03D004719
(35 genes in 27 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
phosphate starvation response 1
Curated Summary
Similar to phosphate starvation response gene from Chlamydomonas. Weakly responsive to phosphate starvation. Acts upstream of PHO2 in phosphate signaling.
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Identifiers

Identifier Name
aliasAtPHR1
aliasPHR1
aliasphosphate starvation response 1

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355TASGene Ontologyregulation of transcription, DNA-dependent1
GO:0016036IMPGene Ontologycellular response to phosphate starvation1
GO:0055063IMPGene Ontologysulfate ion homeostasis1
GO:0007623IEPGene Ontologycircadian rhythm1
GO:0071486IMPGene Ontologycellular response to high light intensity1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700ISSGene Ontologysequence-specific DNA binding transcription factor activity1
GO:0003682IEAInterProchromatin binding
GO:0003677IEAInterProDNA binding
GO:0005488IEAPLAZA HomologybindingHOM03D000096
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03D000096
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03D000096
GO:0003676IEAPLAZA Homologynucleic acid bindingHOM03D000096

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISMGene Ontologynucleus1 2

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR006447Myb domain, plants
IPR017930Myb domain
IPR009057Homeodomain-like
IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
IPR001005SANT/Myb domain

Mapman id Description
27.3.20RNA.regulation of transcription.G2-like transcription factor family, GARP
No SignalP domains detected for this gene.

Binding sites bound by this Transcription Factor

Binding siteNameDescriptionCounts
Matrix_162AtPHR1Not available537 genes in 10 species

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DatabaseType
PlnTFDBG2-like
PlantTFDBG2-like