Gene: AT4G25500 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT4G25500
Transcript Identifier
AT4G25500.1
Gene Type
Coding gene
Location
4 : 13025168-13027243 : positive

Family

Gene family
HOM03D001452
(109 genes in 30 species)
specific family
Subfamily
ORTHO03D007117
(31 genes in 25 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
arginine/serine-rich splicing factor 35
Curated Summary
encodes an arginine/serine-rich splicing factor. transcript is alternatively spliced and is differentially expressed in different tissues (flowers, roots, stems, and leaves) examined. Barta et al (2010) have proposed a nomenclature for Serine/Arginine-Rich Protein Splicing Factors (SR proteins): Plant Cell. 2010, 22:2926.
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Identifiers

Identifier Name
aliasRS40
aliasATRSP40
aliasARABIDOPSIS THALIANA ARGININE/SERINE-RICH SPLICING FACTOR 35
aliasRSP35
aliasarginine/serine-rich splicing factor 35
aliasAt-RS40
aliasAT-SRP40
aliasarginine/serine-rich splicing factor 40
aliasATRSP35
uniprotP92965

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0008380NASGene OntologyRNA splicing1
GO:0000398ISS, RCA, UniProtmRNA splicing, via spliceosome1 2 3 4 5 6 7

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003723IEA, ISSUniProtRNA binding1 2 3 4 5 6
GO:0000166IEAUniProtnucleotide binding1 2 3 4 5
GO:0003676IEAInterPronucleic acid binding
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03D001452

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISMGene Ontologynucleus1
GO:0016607IDAUniProtnuclear speck1 2 3 4 5 6
GO:0005681ISSUniProtspliceosomal complex1 2 3 4 5 6

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000504RNA recognition motif domain
IPR012677Nucleotide-binding, alpha-beta plait

Mapman id Description
27.1.1RNA.processing.splicing
No SignalP domains detected for this gene.