Gene: AT4G16860 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT4G16860
Transcript Identifier
AT4G16860.1
Gene Type
Coding gene
Location
4 : 9488584-9495700 : negative

Family

Gene family
HOM03D000005
(4790 genes in 30 species)
specific family
Subfamily
ORTHO03D003182
(38 genes in 5 species)
specific family
Duplication type
Tandem duplicate

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Descriptions

Description
Disease resistance protein (TIR-NBS-LRR class) family
Curated Summary
Confers resistance to Peronospora parasitica. RPP4 is coordinately regulated by transcriptional activation and RNA silencing.
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Identifiers

Identifier Name
aliasRPP4
aliasrecognition of peronospora parasitica 4

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006952ISS, TAS, IEAGene Ontologydefense response1 2
GO:0009817ISSGene Ontologydefense response to fungus, incompatible interaction1
GO:0007165IEAInterProsignal transduction
GO:0009733ISOPLAZA Tree-based Orthologyresponse to auxinAT4G16890
GO:0042742ISOPLAZA Tree-based Orthologydefense response to bacteriumAT4G16890 AT5G46470
GO:0009862ISOPLAZA Tree-based Orthologysystemic acquired resistance, salicylic acid mediated signaling pathwayAT4G16890
GO:0051716IEAPLAZA Homologycellular response to stimulusHOM03D000005
GO:0044763IEAPLAZA Homologysingle-organism cellular processHOM03D000005
GO:0007154IEAPLAZA Homologycell communicationHOM03D000005
GO:0050789IEAPLAZA Homologyregulation of biological processHOM03D000005
GO:0009987IEAPLAZA Homologycellular processHOM03D000005
GO:0023052IEAPLAZA HomologysignalingHOM03D000005
GO:0044699IEAPLAZA Homologysingle-organism processHOM03D000005
GO:0006950IEAPLAZA Homologyresponse to stressHOM03D000005
GO:0065007IEAPLAZA Homologybiological regulationHOM03D000005
GO:0050794IEAPLAZA Homologyregulation of cellular processHOM03D000005
GO:0044700IEAPLAZA Homologysingle organism signalingHOM03D000005
GO:0050896IEAPLAZA Homologyresponse to stimulusHOM03D000005

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0030275ISSGene OntologyLRR domain binding1
GO:0005515IEAInterProprotein binding
GO:0043531IEAInterProADP binding
GO:0000166ISOPLAZA Tree-based Orthologynucleotide bindingAT4G16950
GO:0032555IEAPLAZA Homologypurine ribonucleotide bindingHOM03D000005
GO:0043168IEAPLAZA Homologyanion bindingHOM03D000005
GO:0032553IEAPLAZA Homologyribonucleotide bindingHOM03D000005
GO:0043167IEAPLAZA Homologyion bindingHOM03D000005
GO:0097367IEAPLAZA Homologycarbohydrate derivative bindingHOM03D000005
GO:0032559IEAPLAZA Homologyadenyl ribonucleotide bindingHOM03D000005
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03D000005
GO:0001882IEAPLAZA Homologynucleoside bindingHOM03D000005
GO:0030554IEAPLAZA Homologyadenyl nucleotide bindingHOM03D000005
GO:0017076IEAPLAZA Homologypurine nucleotide bindingHOM03D000005
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03D000005
GO:0036094IEAPLAZA Homologysmall molecule bindingHOM03D000005
GO:0032549IEAPLAZA Homologyribonucleoside bindingHOM03D000005
GO:0005488IEAPLAZA HomologybindingHOM03D000005
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03D000005
GO:0001883IEAPLAZA Homologypurine nucleoside bindingHOM03D000005
GO:0032550IEAPLAZA Homologypurine ribonucleoside bindingHOM03D000005

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009506ISOPLAZA Tree-based OrthologyplasmodesmaAT1G31540
GO:0005739ISOPLAZA Tree-based OrthologymitochondrionAT4G16940
GO:0005829ISOPLAZA Tree-based OrthologycytosolAT4G16890 AT5G46520
GO:0005634ISOPLAZA Tree-based OrthologynucleusAT4G16890 AT5G46520

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000157Toll/interleukin-1 receptor homology (TIR) domain
IPR000767Disease resistance protein
IPR001611Leucine-rich repeat
IPR011713Leucine-rich repeat 3
IPR027417P-loop containing nucleoside triphosphate hydrolase
IPR002182NB-ARC

Mapman id Description
20.1stress.biotic
No SignalP domains detected for this gene.