Gene: AT4G16250 (Arabidopsis thaliana)

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Gene Identifier
AT4G16250
Transcript Identifier
AT4G16250.1
Gene Type
Coding gene
Location
4 : 9195602-9199486 : negative

Family

Gene family
HOM03D000490
(262 genes in 31 species)
specific family
Subfamily
ORTHO03D000373
(95 genes in 28 species)
specific family

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Descriptions

Description
phytochrome D
Curated Summary
Encodes a phytochrome photoreceptor with a function similar to that of phyB that absorbs the red/far-red part of the light spectrum and is involved in light responses. It cannot compensate for phyB loss in Arabidopsis but can substitute for tobacco phyB in vivo.
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Identifiers

Identifier Name
aliasphytochrome D
aliasPHYD
uniprotP42497

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355IEA, ISSUniProtregulation of transcription, DNA-dependent1 2 3 4
GO:0010017IGI, RCAGene Ontologyred or far-red light signaling pathway1 2
GO:0007623RCAGene Ontologycircadian rhythm1
GO:0009630RCAGene Ontologygravitropism1
GO:0010155RCAGene Ontologyregulation of proton transport1
GO:0046777RCAGene Ontologyprotein autophosphorylation1
GO:0009584IEAUniProtdetection of visible light1 2 3
GO:0018298IEAUniProtprotein-chromophore linkage1 2 3
GO:0007165IEAInterProsignal transduction
GO:0000160IEAUniProtphosphorelay signal transduction system1 2 3
GO:0017006IEAUniProtprotein-tetrapyrrole linkage1 2 3
GO:0023014IEAUniProtsignal transduction by phosphorylation1 2 3
GO:0006351IEAUniProttranscription, DNA-templated1 2 3
GO:0010202ISOPLAZA Tree-based Orthologyresponse to low fluence red light stimulusAT2G18790
GO:0010218ISOPLAZA Tree-based Orthologyresponse to far red lightAT2G18790
GO:0009640ISOPLAZA Tree-based OrthologyphotomorphogenesisAT2G18790
GO:0006325ISOPLAZA Tree-based Orthologychromatin organizationAT2G18790
GO:0015979ISOPLAZA Tree-based OrthologyphotosynthesisAT2G18790
GO:0010374ISOPLAZA Tree-based Orthologystomatal complex developmentAT2G18790
GO:0010148ISOPLAZA Tree-based OrthologytranspirationAT2G18790
GO:0031347ISOPLAZA Tree-based Orthologyregulation of defense responseAT2G18790
GO:0009867ISOPLAZA Tree-based Orthologyjasmonic acid mediated signaling pathwayAT2G18790
GO:0010617ISOPLAZA Tree-based Orthologycircadian regulation of calcium ion oscillationAT2G18790
GO:0010029ISOPLAZA Tree-based Orthologyregulation of seed germinationAT2G18790
GO:0009687ISOPLAZA Tree-based Orthologyabscisic acid metabolic processAT2G18790
GO:0009638ISOPLAZA Tree-based OrthologyphototropismAT2G18790
GO:0009649ISOPLAZA Tree-based Orthologyentrainment of circadian clockAT2G18790
GO:0009409ISOPLAZA Tree-based Orthologyresponse to coldAT2G18790
GO:0010161ISOPLAZA Tree-based Orthologyred light signaling pathwayAT2G18790
GO:0010467IEAPLAZA Homologygene expressionHOM03D000490
GO:0051606IEAPLAZA Homologydetection of stimulusHOM03D000490
GO:0034645IEAPLAZA Homologycellular macromolecule biosynthetic processHOM03D000490
GO:0016070IEAPLAZA HomologyRNA metabolic processHOM03D000490
GO:0044763IEAPLAZA Homologysingle-organism cellular processHOM03D000490
GO:0009583IEAPLAZA Homologydetection of light stimulusHOM03D000490
GO:0009605IEAPLAZA Homologyresponse to external stimulusHOM03D000490
GO:0009582IEAPLAZA Homologydetection of abiotic stimulusHOM03D000490
GO:0009581IEAPLAZA Homologydetection of external stimulusHOM03D000490

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004871ISS, IEAGene Ontologysignal transducer activity1
GO:0008020ISSGene OntologyG-protein coupled photoreceptor activity1
GO:0005515IPI, IEAGene Ontologyprotein binding1
GO:0042802IPIGene Ontologyidentical protein binding1
GO:0009883IGIUniProtred or far-red light photoreceptor activity1 2 3 4
GO:0005524IEAUniProtATP binding1 2 3
GO:0000155IEAUniProtphosphorelay sensor kinase activity1 2 3
GO:0031517ISOPLAZA Tree-based Orthologyred light photoreceptor activityAT2G18790
GO:0031516ISOPLAZA Tree-based Orthologyfar-red light photoreceptor activityAT2G18790
GO:0038023IEAPLAZA Homologysignaling receptor activityHOM03D000490
GO:0003824IEAPLAZA Homologycatalytic activityHOM03D000490

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDAUniProtnucleus1 2 3 4
GO:0016020IEAUniProtmembrane1 2 3
GO:0005829ISOPLAZA Tree-based OrthologycytosolAT2G18790
GO:0016604ISOPLAZA Tree-based Orthologynuclear bodyAT2G18790

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR001294Phytochrome
IPR000014PAS domain
IPR003018GAF domain
IPR003594Histidine kinase-like ATPase, ATP-binding domain
IPR005467Signal transduction histidine kinase, core
IPR016132Phytochrome chromophore attachment domain
IPR013516Phytochrome chromophore binding site
IPR013767PAS fold
IPR013654PAS fold-2
IPR013515Phytochrome, central region
IPR003661Signal transduction histidine kinase EnvZ-like, dimerisation/phosphoacceptor domain

Mapman id Description
30.11signalling.light
No SignalP domains detected for this gene.