Gene: AT4G15950 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT4G15950
Transcript Identifier
AT4G15950.1
Gene Type
Coding gene
Location
4 : 9040743-9041994 : positive

Family

Gene family
HOM03D002186
(79 genes in 31 species)
specific family
Subfamily
ORTHO03D008477
(29 genes in 25 species)
specific family

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Descriptions

Description
RNA polymerase II, Rpb4, core protein
Curated Summary
Non-catalytic subunit common to Nuclear DNA-dependent RNA polymerases IV and V; homologous to budding yeast RPB4. Role in gene silencing. Required for RNA-directed DNA methylation.
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Identifiers

Identifier Name
aliasNRPE4
aliasNRPD4
aliasRNA-DIRECTED DNA METHYLATION 2
aliasRDM2
uniprotQ6DBA5

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0010426IMPGene OntologyDNA methylation on cytosine within a CHH sequence1
GO:0016246IMPGene OntologyRNA interference1
GO:0030422IGIGene Ontologyproduction of siRNA involved in RNA interference1
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5
GO:0044237IEAInterProcellular metabolic process

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0000166IEAUniProtnucleotide binding1 2 3 4 5
GO:0003899IEAUniProtDNA-directed RNA polymerase activity1 2 3 4 5
GO:0003824IEAInterProcatalytic activity
GO:1901265IEAPLAZA Homologynucleoside phosphate bindingHOM03D002186

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISMGene Ontologynucleus1 2
GO:0000418IDA, IPIUniProtDNA-directed RNA polymerase IV complex1 2 3 4 5 6
GO:0000419IDA, IPIUniProtDNA-directed RNA polymerase V complex1 2 3 4 5 6

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR006590RNA polymerase II, Rpb4, core
IPR005574RNA polymerase II, Rpb4
IPR010997HRDC-like

Mapman id Description
35.2not assigned.unknown
No SignalP domains detected for this gene.