Gene: AT4G15560 (Arabidopsis thaliana)

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Gene Identifier
AT4G15560
Transcript Identifier
AT4G15560.1
Gene Type
Coding gene
Location
4 : 8884218-8887254 : positive

Family

Gene family
HOM03D001085
(140 genes in 31 species)
specific family
Subfamily
ORTHO03D000206
(127 genes in 31 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
Deoxyxylulose-5-phosphate synthase
Curated Summary
Encodes a protein with 1-deoxyxylulose 5-phosphate synthase activity involved in the MEP pathway. It is essential for chloroplast development in Arabidopsis
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Identifiers

Identifier Name
alias1-deoxy-D-xylulose 5-phosphate (DXP) synthase 1
aliasDXS1
aliasAtCLA1
alias1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE 2
aliasDXS
aliasDEF
aliasCLA
aliasCLA1
aliasDXPS2
aliasCLOROPLASTOS ALTERADOS 1
alias1-DEOXY-D-XYLULOSE 5-PHOSPHATE SYNTHASE
uniprotQ38854

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0015995IMP, RCA, UniProtchlorophyll biosynthetic process1 2 3 4 5 6 7 8 9 10 11 12
GO:0019288TAS, RCAUniProtisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1 2 3 4 5 6 7 8 9 10 11 12
GO:0000096RCAGene Ontologysulfur amino acid metabolic process1
GO:0006546RCAGene Ontologyglycine catabolic process1
GO:0006636RCAGene Ontologyunsaturated fatty acid biosynthetic process1
GO:0006655RCAGene Ontologyphosphatidylglycerol biosynthetic process1
GO:0006733RCAGene Ontologyoxidoreduction coenzyme metabolic process1
GO:0006766RCAGene Ontologyvitamin metabolic process1
GO:0008652RCAGene Ontologycellular amino acid biosynthetic process1
GO:0009072RCAGene Ontologyaromatic amino acid family metabolic process1
GO:0009073RCAGene Ontologyaromatic amino acid family biosynthetic process1
GO:0009106RCAGene Ontologylipoate metabolic process1
GO:0009108RCAGene Ontologycoenzyme biosynthetic process1
GO:0009117RCAGene Ontologynucleotide metabolic process1
GO:0009416RCAGene Ontologyresponse to light stimulus1
GO:0009695RCAGene Ontologyjasmonic acid biosynthetic process1
GO:0009965RCAGene Ontologyleaf morphogenesis1
GO:0010155RCAGene Ontologyregulation of proton transport1
GO:0015994RCAGene Ontologychlorophyll metabolic process1
GO:0016117RCAGene Ontologycarotenoid biosynthetic process1
GO:0019216RCAGene Ontologyregulation of lipid metabolic process1
GO:0019344RCAGene Ontologycysteine biosynthetic process1
GO:0019748RCAGene Ontologysecondary metabolic process1
GO:0030154RCAGene Ontologycell differentiation1
GO:0031408RCAGene Ontologyoxylipin biosynthetic process1
GO:0032880RCAGene Ontologyregulation of protein localization1
GO:0044272RCAGene Ontologysulfur compound biosynthetic process1
GO:0045893RCAGene Ontologypositive regulation of transcription, DNA-dependent1
GO:0046777RCAGene Ontologyprotein autophosphorylation1
GO:0008152IEAInterPrometabolic process
GO:0016114IEAUniProtterpenoid biosynthetic process1 2 3 4 5 6 7 8 9 10
GO:0052865IEAUniProt1-deoxy-D-xylulose 5-phosphate biosynthetic process1 2 3 4 5 6 7 8 9 10
GO:0009228IEAUniProtthiamine biosynthetic process1 2 3 4 5 6 7 8 9 10
GO:0008299IEAPLAZA Homologyisoprenoid biosynthetic processHOM03D001085
GO:0006721IEAPLAZA Homologyterpenoid metabolic processHOM03D001085
GO:0006720IEAPLAZA Homologyisoprenoid metabolic processHOM03D001085

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0008661IDA, IEA, UniProt1-deoxy-D-xylulose-5-phosphate synthase activity1 2 3 4 5 6 7 8 9 10 11
GO:0003824IEAInterProcatalytic activity
GO:0046872IEAUniProtmetal ion binding1 2 3 4 5 6 7 8 9 10
GO:0016744IEAPLAZA Homologytransferase activity, transferring aldehyde or ketonic groupsHOM03D001085

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0009507IDA, ISM, UniProtchloroplast1 2 3 4 5 6 7 8 9 10 11 12
GO:0009570IEAUniProtchloroplast stroma1 2 3 4 5 6 7 8 9 10

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR005474Transketolase, N-terminal
IPR005477Deoxyxylulose-5-phosphate synthase
IPR020826Transketolase binding site
IPR009014Transketolase, C-terminal/Pyruvate-ferredoxin oxidoreductase, domain II
IPR005475Transketolase-like, pyrimidine-binding domain
IPR005476Transketolase, C-terminal

Mapman id Description
16.1.1.1secondary metabolism.isoprenoids.non-mevalonate pathway.DXS
No SignalP domains detected for this gene.