Gene: AT4G13930 (Arabidopsis thaliana)

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Gene Identifier
AT4G13930
Transcript Identifier
AT4G13930.1
Gene Type
Coding gene
Location
4 : 8048013-8050021 : negative

Family

Gene family
HOM03D000445
(283 genes in 31 species)
specific family
Subfamily
ORTHO03D000588
(76 genes in 29 species)
specific family
Duplication type
Tandem duplicate

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Descriptions

Description
serine hydroxymethyltransferase 4
Curated Summary
Encodes a serine hydroxymethyltransferase maximally expressed in root
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Identifiers

Identifier Name
aliasSHM4
aliasserine hydroxymethyltransferase 4
uniprotO23254

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006544IEA, ISSUniProtglycine metabolic process1 2 3 4 5 6 7 8
GO:0006563IEA, ISSUniProtL-serine metabolic process1 2 3 4 5 6 7 8
GO:0007623IEPUniProtcircadian rhythm1 2 3 4 5 6 7 8
GO:0046686IEPUniProtresponse to cadmium ion1 2 3 4 5 6 7 8
GO:0035999IEAUniProttetrahydrofolate interconversion1 2 3 4 5 6 7
GO:0009069IEAPLAZA Homologyserine family amino acid metabolic processHOM03D000445
GO:0044281IEAPLAZA Homologysmall molecule metabolic processHOM03D000445
GO:0043436IEAPLAZA Homologyoxoacid metabolic processHOM03D000445
GO:0006520IEAPLAZA Homologycellular amino acid metabolic processHOM03D000445
GO:1901564IEAPLAZA Homologyorganonitrogen compound metabolic processHOM03D000445
GO:1901605IEAPLAZA Homologyalpha-amino acid metabolic processHOM03D000445
GO:0006082IEAPLAZA Homologyorganic acid metabolic processHOM03D000445
GO:0019752IEAPLAZA Homologycarboxylic acid metabolic processHOM03D000445

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0004372IEA, ISSUniProtglycine hydroxymethyltransferase activity1 2 3 4 5 6 7 8
GO:0005515IPIGene Ontologyprotein binding1
GO:0030170IEAUniProtpyridoxal phosphate binding1 2 3 4 5 6 7
GO:0003824IEAInterProcatalytic activity
GO:0048037IEAPLAZA Homologycofactor bindingHOM03D000445
GO:0016742IEAPLAZA Homologyhydroxymethyl-, formyl- and related transferase activityHOM03D000445
GO:0016741IEAPLAZA Homologytransferase activity, transferring one-carbon groupsHOM03D000445

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737ISMGene Ontologycytoplasm1
GO:0005829IDA, ISS, UniProtcytosol1 2 3 4 5 6 7 8 9
GO:0016020IDAGene Ontologymembrane1
GO:0005886IDAUniProtplasma membrane1 2 3 4 5 6 7 8
GO:0009506IDAUniProtplasmodesma1 2 3 4 5 6 7 8

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR015421Pyridoxal phosphate-dependent transferase, major region, subdomain 1
IPR015422Pyridoxal phosphate-dependent transferase, major region, subdomain 2
IPR019798Serine hydroxymethyltransferase, pyridoxal phosphate binding site
IPR001085Serine hydroxymethyltransferase
IPR015424Pyridoxal phosphate-dependent transferase

Mapman id Description
25.1C1-metabolism.glycine hydroxymethyltransferase
No SignalP domains detected for this gene.