Gene: AT4G00380 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT4G00380
Transcript Identifier
AT4G00380.1
Gene Type
Coding gene
Location
4 : 167959-170448 : positive

Family

Gene family
HOM03D000512
(253 genes in 29 species)
specific family
Subfamily
ORTHO03D010181
(26 genes in 17 species)
specific family

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Descriptions

Description
XH/XS domain-containing protein
Curated Summary
Belongs to a subgroup of SGS3-like proteins that act redundantly in RNA-directed DNA methylation: AT1G15910 (FDM1), AT4G00380 (FDM2), AT3G12550 (FDM3), AT1G13790 (FDM4), AT1G80790 (FDM5).
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Identifiers

Identifier Name
aliasfactor of DNA methylation 2
aliasIDN2 PARALOG 2
aliasIDP2
aliasINVOLVED IN DE NOVO 2 (IDN2) - LIKE 2
aliasINDL2
aliasFDM2

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0080188IGIGene OntologyRNA-directed DNA methylation1
GO:0031047IEAInterProgene silencing by RNA
GO:0016458IEAPLAZA Homologygene silencingHOM03D000512
GO:0048519IEAPLAZA Homologynegative regulation of biological processHOM03D000512
GO:0009892IEAPLAZA Homologynegative regulation of metabolic processHOM03D000512
GO:0010605IEAPLAZA Homologynegative regulation of macromolecule metabolic processHOM03D000512
GO:0010629IEAPLAZA Homologynegative regulation of gene expressionHOM03D000512

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0043621ISOPLAZA Integrative Orthologyprotein self-associationAT1G15910
GO:0003723ISOPLAZA Integrative OrthologyRNA bindingAT1G15910
GO:0005515ISOPLAZA Integrative Orthologyprotein bindingAT1G15910
GO:0003677ISOPLAZA Integrative OrthologyDNA bindingAT1G15910
GO:0003725ISOPLAZA Integrative Orthologydouble-stranded RNA bindingAT1G15910

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005737ISMGene Ontologycytoplasm1
GO:0009506ISOPLAZA Integrative OrthologyplasmodesmaAT1G15910

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR005379Uncharacterised domain XH
IPR005381Zinc finger-XS domain
IPR005380XS domain

Mapman id Description
27.3.99RNA.regulation of transcription.unclassified
No SignalP domains detected for this gene.