Gene: AT3G62030 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G62030
Transcript Identifier
AT3G62030.2
Gene Type
Coding gene
Location
3 : 22973004-22975139 : positive

Family

Gene family
HOM03D000143
(727 genes in 31 species)
specific family
Subfamily
ORTHO03D011210
(24 genes in 24 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
rotamase CYP 4
Curated Summary
nuclear-encoded chloroplast stromal cyclophilin CYP20-3 (also known as ROC4). Protein is tyrosine-phosphorylated and its phosphorylation state is modulated in response to ABA in Arabidopsis thaliana seeds.
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Identifiers

Identifier Name
aliasCYP20-3
aliascyclophilin 20-3
aliasrotamase CYP 4
aliasROC4
uniprotP34791

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006457IEA, ISSUniProtprotein folding1 2 3 4 5 6 7 8 9 10 11
GO:0000413IEA, IDAUniProtprotein peptidyl-prolyl isomerization1 2 3 4 5 6 7 8 9 10 11
GO:0042742IEP, RCAGene Ontologydefense response to bacterium1 2
GO:0009737IEPGene Ontologyresponse to abscisic acid1
GO:0006979IMPGene Ontologyresponse to oxidative stress1
GO:0009642IMPGene Ontologyresponse to light intensity1
GO:0009651IMPGene Ontologyresponse to salt stress1
GO:0010555IMPGene Ontologyresponse to mannitol1
GO:0019344IMP, RCAGene Ontologycysteine biosynthetic process1 2
GO:0000096RCAGene Ontologysulfur amino acid metabolic process1
GO:0006546RCAGene Ontologyglycine catabolic process1
GO:0006636RCAGene Ontologyunsaturated fatty acid biosynthetic process1
GO:0006733RCAGene Ontologyoxidoreduction coenzyme metabolic process1
GO:0006766RCAGene Ontologyvitamin metabolic process1
GO:0008652RCAGene Ontologycellular amino acid biosynthetic process1
GO:0009072RCAGene Ontologyaromatic amino acid family metabolic process1
GO:0009073RCAGene Ontologyaromatic amino acid family biosynthetic process1
GO:0009106RCAGene Ontologylipoate metabolic process1
GO:0009108RCAGene Ontologycoenzyme biosynthetic process1
GO:0009117RCAGene Ontologynucleotide metabolic process1
GO:0009409RCAGene Ontologyresponse to cold1
GO:0009637RCAGene Ontologyresponse to blue light1
GO:0009644RCAGene Ontologyresponse to high light intensity1
GO:0009695RCAGene Ontologyjasmonic acid biosynthetic process1
GO:0009697RCAGene Ontologysalicylic acid biosynthetic process1
GO:0009744RCAGene Ontologyresponse to sucrose1
GO:0009814RCAGene Ontologydefense response, incompatible interaction1
GO:0009965RCAGene Ontologyleaf morphogenesis1
GO:0010114RCAGene Ontologyresponse to red light1
GO:0010155RCAGene Ontologyregulation of proton transport1
GO:0010218RCAGene Ontologyresponse to far red light1
GO:0015995RCAGene Ontologychlorophyll biosynthetic process1
GO:0019288RCAGene Ontologyisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1
GO:0019684RCAGene Ontologyphotosynthesis, light reaction1
GO:0019748RCAGene Ontologysecondary metabolic process1
GO:0030154RCAGene Ontologycell differentiation1
GO:0044272RCAGene Ontologysulfur compound biosynthetic process1
GO:0045036IDA, RCAGene Ontologyprotein targeting to chloroplast1 2
GO:0045893RCAGene Ontologypositive regulation of transcription, DNA-dependent1
GO:0007165ISSGene Ontologysignal transduction1
GO:0009987IEAPLAZA Homologycellular processHOM03D000143
GO:0044260IEAPLAZA Homologycellular macromolecule metabolic processHOM03D000143
GO:0008152IEAPLAZA Homologymetabolic processHOM03D000143
GO:0071704IEAPLAZA Homologyorganic substance metabolic processHOM03D000143
GO:0044267IEAPLAZA Homologycellular protein metabolic processHOM03D000143
GO:0043170IEAPLAZA Homologymacromolecule metabolic processHOM03D000143
GO:0019538IEAPLAZA Homologyprotein metabolic processHOM03D000143
GO:0044237IEAPLAZA Homologycellular metabolic processHOM03D000143
GO:0044238IEAPLAZA Homologyprimary metabolic processHOM03D000143

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003755IEA, IDA, ISSUniProtpeptidyl-prolyl cis-trans isomerase activity1 2 3 4 5 6 7 8 9 10 11 12
GO:0005515IPIGene Ontologyprotein binding1
GO:0042277IEAUniProtpeptide binding1 2 3 4 5 6 7 8 9 10
GO:0003824IEAPLAZA Homologycatalytic activityHOM03D000143
GO:0016853IEAPLAZA Homologyisomerase activityHOM03D000143
GO:0016859IEAPLAZA Homologycis-trans isomerase activityHOM03D000143

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005739ISMGene Ontologymitochondrion1
GO:0031977IDAGene Ontologythylakoid lumen1
GO:0009941IDAGene Ontologychloroplast envelope1
GO:0009507IDAGene Ontologychloroplast1
GO:0009535IDAGene Ontologychloroplast thylakoid membrane1
GO:0022626IDAGene Ontologycytosolic ribosome1
GO:0009570IEA, IDAUniProtchloroplast stroma1 2 3 4 5 6 7 8 9 10 11
GO:0009579IDAGene Ontologythylakoid1
GO:0048046IDAGene Ontologyapoplast1

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR002130Cyclophilin-like peptidyl-prolyl cis-trans isomerase domain
IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site

Mapman id Description
31.3.1cell.cycle.peptidylprolyl isomerase
No SignalP domains detected for this gene.