Gene: AT3G61140 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G61140
Transcript Identifier
AT3G61140.1
Gene Type
Coding gene
Location
3 : 22626335-22628895 : positive

Family

Gene family
HOM03D004135
(46 genes in 30 species)
specific family

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Descriptions

Description
26S proteasome, regulatory subunit Rpn7;Proteasome component (PCI) domain
Curated Summary
Represses photomorphogenesis and induces skotomorphogenesis in the dark. Component of the nuclear-localized COP9 complex. Mutants display striking purple coloration due to anthocyanin accumulation in their cotyledons, first become defective during embryogenesis and exhibit limited seedling development.
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Identifiers

Identifier Name
aliasCSN1
aliasCOP9 SIGNALOSOME SUBUNIT 1
aliasCOP11
aliasSK31
aliasFUSCA 6
aliasEMBRYO DEFECTIVE 78
aliasFUS6
aliasEMB78
aliasATSK31
aliasSHAGGY-LIKE KINASE 31
aliasAtCSN1
aliasARABIDOPSIS THALIANA FUSCA 6
aliasCONSTITUTIVE PHOTOMORPHOGENIC 11
aliasATFUS6
uniprotP45432

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009640RCA, TASGene Ontologyphotomorphogenesis1 2
GO:0000338TASGene Ontologyprotein deneddylation1
GO:0006461IDAUniProtprotein complex assembly1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0006972IEPUniProthyperosmotic response1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0009646IEPUniProtresponse to absence of light1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0009651IEPUniProtresponse to salt stress1 2 3 4 5 6 7 8 9 10 11 12 13 14
GO:0010388IMP, RCA, UniProtcullin deneddylation1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0000003RCAGene Ontologyreproduction1
GO:0006325RCAGene Ontologychromatin organization1
GO:0007062RCAGene Ontologysister chromatid cohesion1
GO:0007131RCAGene Ontologyreciprocal meiotic recombination1
GO:0009793IMP, RCA, UniProtembryo development ending in seed dormancy1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0009845RCAGene Ontologyseed germination1
GO:0009880RCAGene Ontologyembryonic pattern specification1
GO:0009909RCAGene Ontologyregulation of flower development1
GO:0009933RCAGene Ontologymeristem structural organization1
GO:0010072RCAGene Ontologyprimary shoot apical meristem specification1
GO:0010090RCAGene Ontologytrichome morphogenesis1
GO:0010162RCAGene Ontologyseed dormancy process1
GO:0010182RCAGene Ontologysugar mediated signaling pathway1
GO:0010228RCAGene Ontologyvegetative to reproductive phase transition of meristem1
GO:0010431RCAGene Ontologyseed maturation1
GO:0010564RCAGene Ontologyregulation of cell cycle process1
GO:0010638RCAGene Ontologypositive regulation of organelle organization1
GO:0016567RCAGene Ontologyprotein ubiquitination1
GO:0016571RCAGene Ontologyhistone methylation1
GO:0016579RCAGene Ontologyprotein deubiquitination1
GO:0019915RCAGene Ontologylipid storage1
GO:0033044RCAGene Ontologyregulation of chromosome organization1
GO:0045595RCAGene Ontologyregulation of cell differentiation1
GO:0045893RCAGene Ontologypositive regulation of transcription, DNA-dependent1
GO:0048366RCAGene Ontologyleaf development1
GO:0048825RCAGene Ontologycotyledon development1
GO:0050826RCAGene Ontologyresponse to freezing1
GO:0051301RCAGene Ontologycell division1
GO:0009585IEAUniProtred, far-red light phototransduction1 2 3 4 5 6 7 8 9 10 11 12 13

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0005515IPI, IEAGene Ontologyprotein binding1

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IDA, ISM, ISSGene Ontologynucleus1 2 3
GO:0008180IPI, TAS, UniProtCOP9 signalosome1 2 3 4 5 6 7 8 9 10 11 12 13 14 15
GO:0005829IDAUniProtcytosol1 2 3 4 5 6 7 8 9 10 11 12 13 14

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR000717Proteasome component (PCI) domain
IPR011991Winged helix-turn-helix DNA-binding domain
IPR01958526S proteasome, regulatory subunit Rpn7

Mapman id Description
30.11.1signalling.light.COP9 signalosome
No SignalP domains detected for this gene.