Gene: AT3G60030 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G60030
Transcript Identifier
AT3G60030.1
Gene Type
Coding gene
Location
3 : 22165856-22169410 : negative

Family

Gene family
HOM03D000165
(617 genes in 31 species)
specific family
Subfamily
ORTHO03D014362
(14 genes in 10 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
squamosa promoter-binding protein-like 12
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Identifiers

Identifier Name
aliasSPL12
aliassquamosa promoter-binding protein-like 12
uniprotQ9S7P5

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006355TASGene Ontologyregulation of transcription, DNA-dependent1
GO:0010413RCAGene Ontologyglucuronoxylan metabolic process1
GO:0045492RCAGene Ontologyxylan biosynthetic process1
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003700ISSUniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5
GO:0003677IEAUniProtDNA binding1 2 3 4
GO:0046872IEAUniProtmetal ion binding1 2 3 4
GO:1901363IEAPLAZA Homologyheterocyclic compound bindingHOM03D000165
GO:0097159IEAPLAZA Homologyorganic cyclic compound bindingHOM03D000165
GO:0003676IEAPLAZA Homologynucleic acid bindingHOM03D000165

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEA, ISMUniProtnucleus1 2 3 4 5
GO:0005622IEAPLAZA HomologyintracellularHOM03D000165
GO:0043226IEAPLAZA HomologyorganelleHOM03D000165
GO:0044464IEAPLAZA Homologycell partHOM03D000165
GO:0043227IEAPLAZA Homologymembrane-bounded organelleHOM03D000165
GO:0005623IEAPLAZA HomologycellHOM03D000165
GO:0043229IEAPLAZA Homologyintracellular organelleHOM03D000165
GO:0044424IEAPLAZA Homologyintracellular partHOM03D000165
GO:0043231IEAPLAZA Homologyintracellular membrane-bounded organelleHOM03D000165

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR020683Ankyrin repeat-containing domain
IPR004333Transcription factor, SBP-box

Mapman id Description
33.3development.squamosa promoter binding like (SPL)
No SignalP domains detected for this gene.

Binding sites bound by this Transcription Factor

Binding siteNameDescriptionCounts
Matrix_137SPL1;SPL12Not available246 genes in 10 species

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DatabaseType
PlnTFDBSBP
PlantTFDBSBP