PLAZA 3.0 Dicots gene overview : AT3G59820

Gene: AT3G59820 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G59820
Transcript Identifier: AT3G59820.2
Gene Type: Coding gene
Location: 3 : 22098289-22101759 : negative

Family

Gene family: HOM03D002283
(77 genes in 31 species)
specific family
Subfamily: ORTHO03D000953
(61 genes in 31 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: LETM1-like protein

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Identifiers

Identifier	Name
alias	LETM1
alias	leucine zipper-EF-hand-containing transmembrane protein 1
alias	AtLETM1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005509	IEA	InterPro	calcium ion binding

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005739	IDA, ISM	Gene Ontology	mitochondrion	1 2

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR002048	EF-hand domain
IPR011685	LETM1-like
IPR018247	EF-Hand 1, calcium-binding site
IPR011992	EF-hand domain pair

Mapman id	Description
30.3	signalling.calcium

No SignalP domains detected for this gene.