Gene: AT3G59060 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G59060
Transcript Identifier
AT3G59060.2
Gene Type
Coding gene
Location
3 : 21828189-21829895 : negative

Family

Gene family
HOM03D000046
(1586 genes in 29 species)
specific family
Subfamily
ORTHO03D009173
(28 genes in 20 species)
specific family
Duplication type
Block duplicate

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Descriptions

Description
phytochrome interacting factor 3-like 6
Curated Summary
Encodes a novel Myc-related bHLH transcription factor, which physically associated with APRR1/TOC1 and is a member of PIF3 transcription factor family. Involved in shade avoidance. Functions as negative regulator of PhyB. Protein levels are modulated by phytochrome B.
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Identifiers

Identifier Name
aliasPIL6
aliasPHYTOCHROME-INTERACTING FACTOR 5
aliasphytochrome interacting factor 3-like 6
aliasPIF5
uniprotQ84LH8

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0009585IMPUniProtred, far-red light phototransduction1 2 3 4 5 6 7 8 9 10 11 12
GO:0009693IMPUniProtethylene biosynthetic process1 2 3 4 5 6 7 8 9 10 11 12
GO:0010600IDAUniProtregulation of auxin biosynthetic process1 2 3 4 5 6 7 8 9 10 11 12
GO:0010928IDAUniProtregulation of auxin mediated signaling pathway1 2 3 4 5 6 7 8 9 10 11 12
GO:0000096RCAGene Ontologysulfur amino acid metabolic process1
GO:0006546RCAGene Ontologyglycine catabolic process1
GO:0006636RCAGene Ontologyunsaturated fatty acid biosynthetic process1
GO:0006733RCAGene Ontologyoxidoreduction coenzyme metabolic process1
GO:0006766RCAGene Ontologyvitamin metabolic process1
GO:0007623RCAGene Ontologycircadian rhythm1
GO:0008652RCAGene Ontologycellular amino acid biosynthetic process1
GO:0009072RCAGene Ontologyaromatic amino acid family metabolic process1
GO:0009073RCAGene Ontologyaromatic amino acid family biosynthetic process1
GO:0009106RCAGene Ontologylipoate metabolic process1
GO:0009108RCAGene Ontologycoenzyme biosynthetic process1
GO:0009117RCAGene Ontologynucleotide metabolic process1
GO:0009630RCAGene Ontologygravitropism1
GO:0009684RCAGene Ontologyindoleacetic acid biosynthetic process1
GO:0009695RCAGene Ontologyjasmonic acid biosynthetic process1
GO:0009965RCAGene Ontologyleaf morphogenesis1
GO:0010017RCAGene Ontologyred or far-red light signaling pathway1
GO:0015995RCAGene Ontologychlorophyll biosynthetic process1
GO:0019288RCAGene Ontologyisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway1
GO:0019344RCAGene Ontologycysteine biosynthetic process1
GO:0019748RCAGene Ontologysecondary metabolic process1
GO:0019761RCAGene Ontologyglucosinolate biosynthetic process1
GO:0030003RCAGene Ontologycellular cation homeostasis1
GO:0030154RCAGene Ontologycell differentiation1
GO:0044272RCAGene Ontologysulfur compound biosynthetic process1
GO:0045893RCAGene Ontologypositive regulation of transcription, DNA-dependent1
GO:0006351IEAUniProttranscription, DNA-templated1 2 3 4 5 6 7 8 9 10 11
GO:0009704ISOPLAZA Tree-based Orthologyde-etiolationAT2G43010
GO:0010161ISOPLAZA Tree-based Orthologyred light signaling pathwayAT2G43010

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEA, ISSUniProtDNA binding1 2 3 4 5 6 7 8 9 10 11 12
GO:0003700ISSUniProtsequence-specific DNA binding transcription factor activity1 2 3 4 5 6 7 8 9 10 11 12
GO:0046983IEAInterProprotein dimerization activity
GO:0005515ISOPLAZA Tree-based Orthologyprotein bindingAT2G43010
GO:0005488IEAPLAZA HomologybindingHOM03D000046

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634IEA, ISMUniProtnucleus1 2 3 4 5 6 7 8 9 10 11 12

Color Legend

Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR011598Myc-type, basic helix-loop-helix (bHLH) domain

Mapman id Description
27.3.6RNA.regulation of transcription.bHLH,Basic Helix-Loop-Helix family
No SignalP domains detected for this gene.

Binding sites bound by this Transcription Factor

Binding siteNameDescriptionCounts
Motif_179CACGTGMOTIF;BES1;PIF4;PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling;A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana; CACGTG motif; G-box; Binding site of Arabidopsis GBF4; C. roseus G-box binding factor 1 (CrGBF1) and 1 (CrGBF2) can act as transcriptional repressors of the Str promoter via direct interaction with the G-box; Essential for expression of beta-phaseolin gene during embryogenesis in bean, tobacco, Arabidopsis; Tomato Pti4 (ERF) regulates defense-related gene expression via GCC box and non-GCC box cis-element (Myb1 (GTTAGTT) and G-box (CACGTG)); Isolation and characterization of a fourth Arabidopsis thaliana G-box-binding factor, which has similarities to Fos oncoprotein; Interaction between BZR1 and PIF4 integrates brassinosteroid and environmental responses11924 genes in 10 species
Matrix_19PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling2078 genes in 10 species
Matrix_64PIF5Not available2651 genes in 10 species
Matrix_191PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling928 genes in 10 species
Matrix_251PIF5Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling1555 genes in 10 species

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DatabaseType
PlnTFDBbHLH
PlantTFDBbHLH