PLAZA 3.0 Dicots gene overview : AT3G54870

Gene: AT3G54870 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G54870
Transcript Identifier: AT3G54870.1
Gene Type: Coding gene
Location: 3 : 20330806-20335823 : positive

Family

Gene family: HOM03D000024
(2160 genes in 31 species)
specific family
Subfamily: ORTHO03D000359
(97 genes in 29 species)
specific family
Duplication type: Block duplicate

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Descriptions

Description: Armadillo/beta-catenin repeat family protein / kinesin motor family protein

Curated Summary: Armadillo-repeat containing kinesin-related protein. Plays a role during transition to root-hair tip growth.Mutants have short, branched root hairs and an excess of endoplasmic microtubles. Phenotype suggests ARK1 plays a role in modulating microtubule depolymerization during root hair tip growth.

Identifiers

Identifier	Name
alias	ARMADILLO REPEAT-CONTAINING KINESIN 1
alias	Arabidopsis thaliana KINESIN Ungrouped clade, gene A
alias	CAE1
alias	AtKINUc
alias	ARK1
alias	CA-ROP2 ENHANCER 1
alias	MRH2
alias	MORPHOGENESIS OF ROOT HAIR 2
uniprot	Q9SV36

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

View

...sequences.
...the multiple sequence alignment of the gene family with BioJS
...BLAST hits against the PLAZA database.
...BLAST hits against NCBIs protein database.
...the gene in Genomeview, a genome browser
...all colinear gene pairs.

Biological Process

GO term	Evidence(s)	Provider	Description	Source
GO:0048765	IMP	Gene Ontology	root hair cell differentiation	1
GO:0048768	IMP	Gene Ontology	root hair cell tip growth	1
GO:0031110	IMP	Gene Ontology	regulation of microtubule polymerization or depolymerization	1
GO:0010054	RCA	Gene Ontology	trichoblast differentiation	1
GO:0007018	IEA	UniProt	microtubule-based movement	1 2 3
GO:0009987	IEA	PLAZA Homology	cellular process	HOM03D000024
GO:0044763	IEA	PLAZA Homology	single-organism cellular process	HOM03D000024
GO:0006928	IEA	PLAZA Homology	cellular component movement	HOM03D000024
GO:0007017	IEA	PLAZA Homology	microtubule-based process	HOM03D000024
GO:0044699	IEA	PLAZA Homology	single-organism process	HOM03D000024

Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0003777	IEA, ISS	UniProt	microtubule motor activity	1 2 3 4
GO:0003779	IDA	Gene Ontology	actin binding	1
GO:0008017	IDA, IEA	Gene Ontology	microtubule binding	1
GO:0005515	IEA	InterPro	protein binding
GO:0005488	IEA	InterPro	binding
GO:0005524	IEA	UniProt	ATP binding	1 2 3
GO:0008092	IEA	PLAZA Homology	cytoskeletal protein binding	HOM03D000024
GO:0032555	IEA	PLAZA Homology	purine ribonucleotide binding	HOM03D000024
GO:0016817	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides	HOM03D000024
GO:0032553	IEA	PLAZA Homology	ribonucleotide binding	HOM03D000024
GO:0043168	IEA	PLAZA Homology	anion binding	HOM03D000024
GO:0043167	IEA	PLAZA Homology	ion binding	HOM03D000024
GO:0035639	IEA	PLAZA Homology	purine ribonucleoside triphosphate binding	HOM03D000024
GO:0016818	IEA	PLAZA Homology	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	HOM03D000024
GO:0032403	IEA	PLAZA Homology	protein complex binding	HOM03D000024
GO:0032559	IEA	PLAZA Homology	adenyl ribonucleotide binding	HOM03D000024
GO:0000166	IEA	PLAZA Homology	nucleotide binding	HOM03D000024
GO:0036094	IEA	PLAZA Homology	small molecule binding	HOM03D000024
GO:0001883	IEA	PLAZA Homology	purine nucleoside binding	HOM03D000024
GO:0097367	IEA	PLAZA Homology	carbohydrate derivative binding	HOM03D000024
GO:0003824	IEA	PLAZA Homology	catalytic activity	HOM03D000024
GO:1901265	IEA	PLAZA Homology	nucleoside phosphate binding	HOM03D000024
GO:0016462	IEA	PLAZA Homology	pyrophosphatase activity	HOM03D000024
GO:0003774	IEA	PLAZA Homology	motor activity	HOM03D000024
GO:0015631	IEA	PLAZA Homology	tubulin binding	HOM03D000024
GO:0030554	IEA	PLAZA Homology	adenyl nucleotide binding	HOM03D000024
GO:0001882	IEA	PLAZA Homology	nucleoside binding	HOM03D000024
GO:0097159	IEA	PLAZA Homology	organic cyclic compound binding	HOM03D000024
GO:0017076	IEA	PLAZA Homology	purine nucleotide binding	HOM03D000024
GO:0017111	IEA	PLAZA Homology	nucleoside-triphosphatase activity	HOM03D000024
GO:0032549	IEA	PLAZA Homology	ribonucleoside binding	HOM03D000024
GO:0016787	IEA	PLAZA Homology	hydrolase activity	HOM03D000024
GO:1901363	IEA	PLAZA Homology	heterocyclic compound binding	HOM03D000024
GO:0032550	IEA	PLAZA Homology	purine ribonucleoside binding	HOM03D000024

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005871	IEA	UniProt	kinesin complex	1 2 3
GO:0005737	IEA	UniProt	cytoplasm	1 2 3
GO:0005874	IEA	UniProt	microtubule	1 2 3
GO:0005622	IEA	PLAZA Homology	intracellular	HOM03D000024
GO:0043226	IEA	PLAZA Homology	organelle	HOM03D000024
GO:0043228	IEA	PLAZA Homology	non-membrane-bounded organelle	HOM03D000024
GO:0032991	IEA	PLAZA Homology	macromolecular complex	HOM03D000024
GO:0043229	IEA	PLAZA Homology	intracellular organelle	HOM03D000024
GO:0005856	IEA	PLAZA Homology	cytoskeleton	HOM03D000024
GO:0044430	IEA	PLAZA Homology	cytoskeletal part	HOM03D000024
GO:0043234	IEA	PLAZA Homology	protein complex	HOM03D000024
GO:0043232	IEA	PLAZA Homology	intracellular non-membrane-bounded organelle	HOM03D000024
GO:0044464	IEA	PLAZA Homology	cell part	HOM03D000024
GO:0044424	IEA	PLAZA Homology	intracellular part	HOM03D000024
GO:0044422	IEA	PLAZA Homology	organelle part	HOM03D000024
GO:0015630	IEA	PLAZA Homology	microtubule cytoskeleton	HOM03D000024
GO:0005875	IEA	PLAZA Homology	microtubule associated complex	HOM03D000024
GO:0005623	IEA	PLAZA Homology	cell	HOM03D000024
GO:0044446	IEA	PLAZA Homology	intracellular organelle part	HOM03D000024

Color Legend

Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR001752	Kinesin, motor domain
IPR000225	Armadillo
IPR027640	Kinesin-like protein
IPR016024	Armadillo-type fold
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR011989	Armadillo-like helical
IPR019821	Kinesin, motor region, conserved site

Mapman id	Description
31.1	cell.organisation

No SignalP domains detected for this gene.