PLAZA 3.0 Dicots gene overview : AT3G54460

Gene: AT3G54460 (Arabidopsis thaliana)

Overview

Gene Identifier: AT3G54460
Transcript Identifier: AT3G54460.1
Gene Type: Coding gene
Location: 3 : 20162050-20167186 : negative

Family

Gene family: HOM03D004901
(41 genes in 30 species)
specific family
Subfamily: ORTHO03D008367
(30 genes in 29 species)
specific family

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Descriptions

Description: SNF2 domain-containing protein / helicase domain-containing protein / F-box family protein

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Identifiers

Identifier	Name
uniprot	Q9M1I1

Toolbox

Explore

...the colinearity of this gene with other genomes.
...the local gene organization for homologous genes.
...the phylogenetic tree of the homologous gene family.
...the orthologs using the Integrative Orthology Viewer.
...the conserved binding sites (upstream/downstream,intron)

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Molecular Function

GO term	Evidence(s)	Provider	Description	Source
GO:0005515	IEA	InterPro	protein binding
GO:0004386	IEA	UniProt	helicase activity	1 2
GO:0008270	IEA	UniProt	zinc ion binding	1 2
GO:0003676	IEA	InterPro	nucleic acid binding
GO:0005524	IEA	UniProt	ATP binding	1 2
GO:0003677	IEA	UniProt	DNA binding	1 2

Cellular Component

GO term	Evidence(s)	Provider	Description	Source
GO:0005634	ISM	Gene Ontology	nucleus	1
GO:0009506	IDA	UniProt	plasmodesma	1 2 3

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Experimental Evidence

Electronic Evidence

Computational Reviewed Evidence

InterPro	Description
IPR014001	Helicase, superfamily 1/2, ATP-binding domain
IPR001810	F-box domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR000330	SNF2-related
IPR011124	Zinc finger, CW-type
IPR001650	Helicase, C-terminal
IPR017907	Zinc finger, RING-type, conserved site

Mapman id	Description
27.3.44	RNA.regulation of transcription.Chromatin Remodeling Factors

No SignalP domains detected for this gene.

Database	Type
PlnTFDB	SNF2