Gene: AT3G52090 (Arabidopsis thaliana)

Overview top

Gene Identifier
AT3G52090
Transcript Identifier
AT3G52090.2
Gene Type
Coding gene
Location
3 : 19318069-19318998 : negative

Family

Gene family
HOM03D004394
(45 genes in 31 species)
specific family
Subfamily
ORTHO03D003881
(37 genes in 31 species)
specific family

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Descriptions

Description
DNA-directed RNA polymerase, RBP11-like
Curated Summary
Non-catalytic subunit common to nuclear DNA-dependent RNA polymerases II, IV and V; homologous to budding yeast RPB11 and the E. oli RNA polymerase alpha subunit.
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Identifiers

Identifier Name
aliasNRPD11
aliasNRPB11
aliasNRPE11
aliasATRPB13.6
uniprotQ38859

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Biological Process

GO termEvidence(s)ProviderDescriptionSource
GO:0006351IEA, ISSUniProttranscription, DNA-templated1 2 3 4 5 6
GO:0000394RCAGene OntologyRNA splicing, via endonucleolytic cleavage and ligation1
GO:0006366RCAGene Ontologytranscription from RNA polymerase II promoter1
GO:0006511RCAGene Ontologyubiquitin-dependent protein catabolic process1
GO:0009086RCAGene Ontologymethionine biosynthetic process1
GO:0009616RCAGene Ontologyvirus induced gene silencing1
GO:0009853RCAGene Ontologyphotorespiration1
GO:0010050RCAGene Ontologyvegetative phase change1
GO:0051788RCAGene Ontologyresponse to misfolded protein1
GO:0080129RCAGene Ontologyproteasome core complex assembly1

Molecular Function

GO termEvidence(s)ProviderDescriptionSource
GO:0003677IEA, ISSUniProtDNA binding1 2 3 4 5 6
GO:0003899IEA, ISSUniProtDNA-directed RNA polymerase activity1 2 3 4 5 6
GO:0046983IEAInterProprotein dimerization activity

Cellular Component

GO termEvidence(s)ProviderDescriptionSource
GO:0005634ISMGene Ontologynucleus1
GO:0000418IDA, IPIUniProtDNA-directed RNA polymerase IV complex1 2 3 4 5 6
GO:0000419IDA, IPIUniProtDNA-directed RNA polymerase V complex1 2 3 4 5 6
GO:0005665IDA, IPIUniProtDNA-directed RNA polymerase II, core complex1 2 3 4 5 6
GO:0016591IPIGene OntologyDNA-directed RNA polymerase II, holoenzyme1

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Experimental Evidence
Electronic Evidence
Computational Reviewed Evidence
GO Sources:   Primary     Orthology     Homology  
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InterPro Description
IPR009025DNA-directed RNA polymerase, RBP11-like dimerisation domain
IPR008193DNA-directed RNA polymerase Rpb11, 13-16kDa subunit, conserved site

Mapman id Description
27.2RNA.transcription
No SignalP domains detected for this gene.